Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq2 181 2e-40
seq1 116 9e-21
seq7019 95.1 3e-14
>seq2
Length=38276455
Score = 181 bits (200), Expect = 2e-40
Identities = 138/163 (85%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547
|| ||||||||||||||| |||| |||||||| |||||||||||||| | |||||||||
Sbjct 18725313 GCTTTATGGTGGTATTATGTCTCGAAAGGAATTGAATACCTAGATACAGTGTTCTTCATC 18725254
Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607
|| | |||||||| || |||||||||||||| ||||| ||||| ||||| || |||||
Sbjct 18725253 CTGAGGAAGAAATTCAACCAAATTAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 18725194
Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650
|||||| | ||||| |||||||| ||| | ||||| |||||||
Sbjct 18725193 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 18725151
Score = 102 bits (112), Expect = 2e-16
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|||||| | |||| || ||||| || || ||||| || |||||||| || ||||||||
Sbjct 2051010 GGAGAACGAGTAGTAGCATTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 2050951
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
| || |||||| |||||||||||||| | ||||| ||| | ||||| ||||| || |
Sbjct 2050950 TCAATTTTTTGGCTGAAGAAAAGAGGCTTAATGCCTGGACTCACTTTTTCTAATGAGCTC 2050891
Query 269246 ATAAGCAGGGACGA 269259
|| || || || ||
Sbjct 2050890 ATCAGTAGAGATGA 2050877
Score = 91.5 bits (100), Expect = 3e-13
Identities = 102/135 (76%), Gaps = 1/135 (1%)
Strand=Plus/Minus
Query 78644 GGACAAGCGTTTCTAGGAGCTGAAATAAATTCATTCGTACACGTTATTATGTATACTTAT 78703
||||| || ||| | |||||| | || |||||||| | || ||||||||||| | |||
Sbjct 18723416 GGACA-GCTTTTTTTGGAGCTCAGATGAATTCATTTATTCATGTTATTATGTACATGTAT 18723358
Query 78704 TACGGTATTGCTGCATGCGGCCCTACATTTCGTAAGTATTTGTGGTGGAAGAGATATCTT 78763
||||| | ||||| || ||||||| | ||| || ||| |||||||||| | || |
Sbjct 18723357 TACGGATTAGCTGCCTGTGGCCCTAAAGTTCAGAAATATCTGTGGTGGAAACGGTACTTG 18723298
Query 78764 ACTATAATGCAATTG 78778
|||||| |||| |||
Sbjct 18723297 ACTATATTGCAGTTG 18723283
Score = 89.7 bits (98), Expect = 1e-12
Identities = 93/121 (77%), Gaps = 1/121 (1%)
Strand=Plus/Minus
Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955
||||| | ||| |||| ||||||| || || || | ||||| | ||||| || || |
Sbjct 2052626 TCTAGGTGGAGCGGTTCAGTCAAGAAGTGCAAATCACAGAAGCACGTTGTTTCTATGGCT 2052567
Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015
||||||| || || |||||||| |||||||| ||||||||||| |||| || || || |
Sbjct 2052566 TCCAGATTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTAATTGACACGTACA 2052507
Query 269016 T 269016
|
Sbjct 2052506 T 2052506
>seq1
Length=54145758
Score = 116 bits (128), Expect = 9e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185
|| || ||| | ||||| ||||| || || ||||| || ||||||||||| || |||||
Sbjct 8045298 GGTGAGAGGGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCT 8045357
Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245
||||| |||||| ||||||| || ||||| ||||| ||||| ||||| || || ||| |
Sbjct 8045358 GCTATATTTTGGCTGAAGAAGAGGGGCCTAATGCCTGGATTGACTTTTTCCAATGAACTT 8045417
Query 269246 ATAAGCAGGGACGA 269259
|| ||||| || ||
Sbjct 8045418 ATTAGCAGAGATGA 8045431
>seq7019
Length=13215502
Score = 95.1 bits (104), Expect = 3e-14
Identities = 183/268 (68%), Gaps = 4/268 (1%)
Strand=Plus/Plus
Query 174073 CAGTAAATATTCTAAACGAATTATACTACAATTAAGTATTGAATGTGAAACTTGTGGAAC 174132
|||| |||| || | ||| ||||||||||| | ||| |||||| | ||||| ||||||
Sbjct 5225389 CAGTGAATACTCCACACGGATTATACTACAGTCAAGGATTGAAGGGGAAACAGGTGGAAT 5225448
Query 174133 TTTCAGCTGTTTATTATTCCAAATTTCAATATTACCAG--GAAGTAGTTGCTTTCCACGC 174190
||||||| ||| |||||| |||| | || |||| || || | | |||||||
Sbjct 5225449 TTTCAGCACTTTTCCATTCCAGGTTTCTGTCTTCCCAGATGATAAAGAT--TCTCCACGC 5225506
Query 174191 GATGAGGTAATAAGGTTTCTAACTTTCTTTATGTTTCTATCAGTATAAAATGTCTGTATT 174250
|| || ||| | | | |||| ||| || |||| | | |||||||| |||| ||
Sbjct 5225507 AGGTTGGCAACAAGCTGTTTGACTTCCTTCATTTTTCCCTTGGCATAAAATGCCTGTGTT 5225566
Query 174251 TGGTAGATACAGACATTAGGCATTACTGCACGAGATGAATTATTTTCAATTTCTGCAACT 174310
||||| || | || |||| || |||| || || |||||||| || ||||
Sbjct 5225567 TGGTAAATGGCTGCCTTTGGCACCACCACACGGGAAGAGCAGTTTTCAATCTCAGCAAAG 5225626
Query 174311 ATCCTAACGTATTCACCAGGTACATAAC 174338
||| || ||||||| | ||| |||
Sbjct 5225627 ATCTGAATTGATTCACCTGAAACAAAAC 5225654
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151218628569688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |