Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2 181 2e-40 seq1 116 9e-21 seq7019 95.1 3e-14 >seq2 Length=38276455 Score = 181 bits (200), Expect = 2e-40 Identities = 138/163 (85%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 78488 GCATTATGGTGGTATTATATCTCTAAAGGAATAGAATACCTAGATACTATCTTCTTCATC 78547 || ||||||||||||||| |||| |||||||| |||||||||||||| | ||||||||| Sbjct 18725313 GCTTTATGGTGGTATTATGTCTCGAAAGGAATTGAATACCTAGATACAGTGTTCTTCATC 18725254 Query 78548 CTACGAAAGAAATTTAATCAAATTAGTTTTCTACATGTATATCATCATTTTACTATGTTT 78607 || | |||||||| || |||||||||||||| ||||| ||||| ||||| || ||||| Sbjct 18725253 CTGAGGAAGAAATTCAACCAAATTAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 18725194 Query 78608 ACTTTGGGATGGATAGGTATTAAATGGTTCGCAGGAGGACAAG 78650 |||||| | ||||| |||||||| ||| | ||||| ||||||| Sbjct 18725193 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACAAG 18725151 Score = 102 bits (112), Expect = 2e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 |||||| | |||| || ||||| || || ||||| || |||||||| || |||||||| Sbjct 2051010 GGAGAACGAGTAGTAGCATTTGCAGCAGTGGAAGGAATCTTCTTTTCTGGCTCTTTTGCA 2050951 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 | || |||||| |||||||||||||| | ||||| ||| | ||||| ||||| || | Sbjct 2050950 TCAATTTTTTGGCTGAAGAAAAGAGGCTTAATGCCTGGACTCACTTTTTCTAATGAGCTC 2050891 Query 269246 ATAAGCAGGGACGA 269259 || || || || || Sbjct 2050890 ATCAGTAGAGATGA 2050877 Score = 91.5 bits (100), Expect = 3e-13 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 78644 GGACAAGCGTTTCTAGGAGCTGAAATAAATTCATTCGTACACGTTATTATGTATACTTAT 78703 ||||| || ||| | |||||| | || |||||||| | || ||||||||||| | ||| Sbjct 18723416 GGACA-GCTTTTTTTGGAGCTCAGATGAATTCATTTATTCATGTTATTATGTACATGTAT 18723358 Query 78704 TACGGTATTGCTGCATGCGGCCCTACATTTCGTAAGTATTTGTGGTGGAAGAGATATCTT 78763 ||||| | ||||| || ||||||| | ||| || ||| |||||||||| | || | Sbjct 18723357 TACGGATTAGCTGCCTGTGGCCCTAAAGTTCAGAAATATCTGTGGTGGAAACGGTACTTG 18723298 Query 78764 ACTATAATGCAATTG 78778 |||||| |||| ||| Sbjct 18723297 ACTATATTGCAGTTG 18723283 Score = 89.7 bits (98), Expect = 1e-12 Identities = 93/121 (77%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 268897 TCTAG-TAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGAT 268955 ||||| | ||| |||| ||||||| || || || | ||||| | ||||| || || | Sbjct 2052626 TCTAGGTGGAGCGGTTCAGTCAAGAAGTGCAAATCACAGAAGCACGTTGTTTCTATGGCT 2052567 Query 268956 TCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATA 269015 ||||||| || || |||||||| |||||||| ||||||||||| |||| || || || | Sbjct 2052566 TCCAGATTGCCATGGAAAATATACATTCAGAAATGTACAGTCTTCTAATTGACACGTACA 2052507 Query 269016 T 269016 | Sbjct 2052506 T 2052506 >seq1 Length=54145758 Score = 116 bits (128), Expect = 9e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 269126 GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCC 269185 || || ||| | ||||| ||||| || || ||||| || ||||||||||| || ||||| Sbjct 8045298 GGTGAGAGGGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCT 8045357 Query 269186 GCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTG 269245 ||||| |||||| ||||||| || ||||| ||||| ||||| ||||| || || ||| | Sbjct 8045358 GCTATATTTTGGCTGAAGAAGAGGGGCCTAATGCCTGGATTGACTTTTTCCAATGAACTT 8045417 Query 269246 ATAAGCAGGGACGA 269259 || ||||| || || Sbjct 8045418 ATTAGCAGAGATGA 8045431 >seq7019 Length=13215502 Score = 95.1 bits (104), Expect = 3e-14 Identities = 183/268 (68%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 174073 CAGTAAATATTCTAAACGAATTATACTACAATTAAGTATTGAATGTGAAACTTGTGGAAC 174132 |||| |||| || | ||| ||||||||||| | ||| |||||| | ||||| |||||| Sbjct 5225389 CAGTGAATACTCCACACGGATTATACTACAGTCAAGGATTGAAGGGGAAACAGGTGGAAT 5225448 Query 174133 TTTCAGCTGTTTATTATTCCAAATTTCAATATTACCAG--GAAGTAGTTGCTTTCCACGC 174190 ||||||| ||| |||||| |||| | || |||| || || | | ||||||| Sbjct 5225449 TTTCAGCACTTTTCCATTCCAGGTTTCTGTCTTCCCAGATGATAAAGAT--TCTCCACGC 5225506 Query 174191 GATGAGGTAATAAGGTTTCTAACTTTCTTTATGTTTCTATCAGTATAAAATGTCTGTATT 174250 || || ||| | | | |||| ||| || |||| | | |||||||| |||| || Sbjct 5225507 AGGTTGGCAACAAGCTGTTTGACTTCCTTCATTTTTCCCTTGGCATAAAATGCCTGTGTT 5225566 Query 174251 TGGTAGATACAGACATTAGGCATTACTGCACGAGATGAATTATTTTCAATTTCTGCAACT 174310 ||||| || | || |||| || |||| || || |||||||| || |||| Sbjct 5225567 TGGTAAATGGCTGCCTTTGGCACCACCACACGGGAAGAGCAGTTTTCAATCTCAGCAAAG 5225626 Query 174311 ATCCTAACGTATTCACCAGGTACATAAC 174338 ||| || ||||||| | ||| ||| Sbjct 5225627 ATCTGAATTGATTCACCTGAAACAAAAC 5225654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151218628569688