Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq1 122 6e-23 >seq1 Length=54145758 Score = 122 bits (134), Expect = 6e-23 Identities = 130/169 (77%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 |||||| |||| |||||||| || | |||||||||||| || || || ||||| | ||| Sbjct 34287165 CATGTCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAGTC 34287106 Query 25833 TCCATCTTCCCTGTGCTCAAAGCCCCT-CTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || ||||| ||| | |||| ||||| |||||||| || || | || |||||||| | Sbjct 34287105 CCCCTCTTCTCTG-GTGCAAAACCCCTGCTTATCCAGGAACTCACGTGATCCATTGGCAT 34287047 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||| ||||| || || || | ||||||||||||| ||||| || || Sbjct 34287046 CCCAAATCTTCACACCTTTTGCAGAGAGCTCTTTGGCATTTGTAGAACC 34286998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340087083826578