Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq22 89.7 3e-13
seq86 82.4 4e-11
>seq22
Length=12138678
Score = 89.7 bits (98), Expect = 3e-13
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||||| ||| |||||| | |||||||||| ||||||| ||||||||||||| ||
Sbjct 7002163 AAAAAACGAAACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 7002104
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||||||||||||| ||||
Sbjct 7002103 GCTCTAACCAACTGAGCTAACCGGCC 7002078
Score = 86.0 bits (94), Expect = 3e-12
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505
||||| || |||||| | |||||||||| ||||||| ||||||||||||| ||||
Sbjct 5456539 AAAATATAACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGC 5456480
Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529
||| |||||||||||||| ||||
Sbjct 5456479 TCTAACCAACTGAGCTAACCGGCC 5456456
Score = 84.2 bits (92), Expect = 1e-11
Identities = 70/85 (82%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
||||| || ||||||| | |||||||||| ||||||| ||||||||||||| |||
Sbjct 6766397 AAAAAACAC-TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 6766339
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||||||||||| | |||||
Sbjct 6766338 CTCTAACCAACTGAGCTGACGGGCC 6766314
>seq86
Length=1767690
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 45195 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 45136
Query 11528 CC 11529
||
Sbjct 45135 CC 45134
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261452364144136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |