Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq119 141 1e-28 seq40 129 8e-25 >seq119 Length=1119390 Score = 141 bits (156), Expect = 1e-28 Identities = 221/312 (71%), Gaps = 3/312 (1%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| || ||| | |||| || ||| | | ||| Sbjct 532692 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 532633 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| || |||||||||| | ||| || ||||| || || |||||||| | |||| Sbjct 532632 TATTGATTATTTCAAACCCCACTTTTCCACCAAAGGTACTTGGCTTCCAGTACTCAGGGG 532573 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 |||| || || |||| || ||||| || || ||||| || || | || | || Sbjct 532572 AGCATATTGTATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCGCCAATTTCTACCATTG 532513 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAACTCC 8917 | ||||| |||||||| || | |||||||| || ||||| || | |||| ||| Sbjct 532512 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTAC-AAGAAGGCCTGGATACAGTTCC 532454 Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT- 8976 | ||| || |||||||||||||| | ||||| ||||| ||||| ||||||||||| Sbjct 532453 ATAGCATCTATGTCTCCGTAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCTGTA 532394 Query 8977 TTTATTAATAAA 8988 |||||||| || Sbjct 532393 ATTATTAATGAA 532382 Score = 134 bits (148), Expect = 2e-26 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| || |||||||| || || || ||| ||| |||||||| || |||||| Sbjct 530476 ATGAGTCTTGTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAG 530417 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | ||| || |||||||||||||| || ||||| || || || |||||||| || || || Sbjct 530416 ATATCACAGACTCTGTTGTGTTCTCTTAGCCATATTGTTGCATACATCATTAGGCCTGGG 530357 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| |||||| |||| || || |||| | ||| | || || || | ||||| Sbjct 530356 ACCAAGCCAAACACCTCCTGTCCAACAGAAAACTGCAGGTGCTCAGGAACATGAGGAGGG 530297 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | | || || || || | || ||||||||||| || ||||| ||| Sbjct 530296 TAGATCATCTCTGCTTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 530237 Query 9862 TG 9863 || Sbjct 530236 TG 530235 Score = 84.2 bits (92), Expect = 3e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348 |||||| || || | || |||||||| || || || || || || | |||| ||| Sbjct 528592 ACCTTTAACACCCATCGGTGTTGGACAGTCATGTCCTACTGGTGGAAGGCTTCTTGTGTA 528533 Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408 |||||| |||||||| ||||||||||| | ||| | ||||| |||||| | || Sbjct 528532 ATAGGAAAGATTGGAATAAGCTTCCCAGGATTTGTAATTATAGTCACTGTTGTATGTTGG 528473 Query 10409 AGGGCTGTCAATCAAATCGGATCT 10432 |||||||||||||| | ||||| Sbjct 528472 TGGGCTGTCAATCAAGTGTGATCT 528449 >seq40 Length=8742107 Score = 129 bits (142), Expect = 8e-25 Identities = 190/269 (71%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 8672 GGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATA 8731 || || |||||||| | |||||||| || |||||| || || || || | Sbjct 7076045 GGCACACGGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCTCCAGT 7075986 Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791 | ||| ||||||||||| | || || |||| || ||||| ||||| |||||||| Sbjct 7075985 GATGCTGTCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCCAGTAC 7075926 Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851 | |||||||||||| ||| | | || || || || ||||| ||||| || | ||| Sbjct 7075925 TCTGGGGAGCAGATGGGATTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCGCCAATCTCC 7075866 Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911 | ||||| || || |||||| ||||||| |||| || || | || || || | || Sbjct 7075865 ACCATGCTTTCCCCAAAGATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAACCCTGGATAA 7075806 Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAG 8940 ||||||| ||| ||||||||||| || || Sbjct 7075805 AACTCCAGAGCATCGATGTCTCCATACAG 7075777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708416873959840