Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_006150.1
Length=221454
Score E
Sequences producing significant alignments: (Bits) Value
seq119 141 1e-28
seq40 129 8e-25
>seq119
Length=1119390
Score = 141 bits (156), Expect = 1e-28
Identities = 221/312 (71%), Gaps = 3/312 (1%)
Strand=Plus/Minus
Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738
|||| || | || ||||| ||||| || ||| | |||| || ||| | | |||
Sbjct 532692 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 532633
Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798
| |||| || |||||||||| | ||| || ||||| || || |||||||| | ||||
Sbjct 532632 TATTGATTATTTCAAACCCCACTTTTCCACCAAAGGTACTTGGCTTCCAGTACTCAGGGG 532573
Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858
|||| || || |||| || ||||| || || ||||| || || | || | ||
Sbjct 532572 AGCATATTGTATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCGCCAATTTCTACCATTG 532513
Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAAT-CCGGTGTACAACTCC 8917
| ||||| |||||||| || | |||||||| || ||||| || | |||| |||
Sbjct 532512 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTAC-AAGAAGGCCTGGATACAGTTCC 532454
Query 8918 ACAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT- 8976
| ||| || |||||||||||||| | ||||| ||||| ||||| |||||||||||
Sbjct 532453 ATAGCATCTATGTCTCCGTAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCTGTA 532394
Query 8977 TTTATTAATAAA 8988
|||||||| ||
Sbjct 532393 ATTATTAATGAA 532382
Score = 134 bits (148), Expect = 2e-26
Identities = 175/242 (72%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681
||||||| || |||||||| || || || ||| ||| |||||||| || ||||||
Sbjct 530476 ATGAGTCTTGTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAG 530417
Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741
| ||| || |||||||||||||| || ||||| || || || |||||||| || || ||
Sbjct 530416 ATATCACAGACTCTGTTGTGTTCTCTTAGCCATATTGTTGCATACATCATTAGGCCTGGG 530357
Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801
|||| |||||| |||| || || |||| | ||| | || || || | |||||
Sbjct 530356 ACCAAGCCAAACACCTCCTGTCCAACAGAAAACTGCAGGTGCTCAGGAACATGAGGAGGG 530297
Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861
|||||||| | | || || || || | || ||||||||||| || ||||| |||
Sbjct 530296 TAGATCATCTCTGCTTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 530237
Query 9862 TG 9863
||
Sbjct 530236 TG 530235
Score = 84.2 bits (92), Expect = 3e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 10289 ACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 10348
|||||| || || | || |||||||| || || || || || || | |||| |||
Sbjct 528592 ACCTTTAACACCCATCGGTGTTGGACAGTCATGTCCTACTGGTGGAAGGCTTCTTGTGTA 528533
Query 10349 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGGG 10408
|||||| |||||||| ||||||||||| | ||| | ||||| |||||| | ||
Sbjct 528532 ATAGGAAAGATTGGAATAAGCTTCCCAGGATTTGTAATTATAGTCACTGTTGTATGTTGG 528473
Query 10409 AGGGCTGTCAATCAAATCGGATCT 10432
|||||||||||||| | |||||
Sbjct 528472 TGGGCTGTCAATCAAGTGTGATCT 528449
>seq40
Length=8742107
Score = 129 bits (142), Expect = 8e-25
Identities = 190/269 (71%), Gaps = 0/269 (0%)
Strand=Plus/Minus
Query 8672 GGAACTCGGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATA 8731
|| || |||||||| | |||||||| || |||||| || || || || |
Sbjct 7076045 GGCACACGGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCTCCAGT 7075986
Query 8732 GTTGCACTCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAA 8791
| ||| ||||||||||| | || || |||| || ||||| ||||| ||||||||
Sbjct 7075985 GATGCTGTCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCCAGTAC 7075926
Query 8792 CCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCG 8851
| |||||||||||| ||| | | || || || || ||||| ||||| || | |||
Sbjct 7075925 TCTGGGGAGCAGATGGGATTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCGCCAATCTCC 7075866
Query 8852 AGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTAC 8911
| ||||| || || |||||| ||||||| |||| || || | || || || | ||
Sbjct 7075865 ACCATGCTTTCCCCAAAGATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAACCCTGGATAA 7075806
Query 8912 AACTCCACAGCCTCGATGTCTCCGTAAAG 8940
||||||| ||| ||||||||||| || ||
Sbjct 7075805 AACTCCAGAGCATCGATGTCTCCATACAG 7075777
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 708416873959840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |