Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq89 96.9 3e-15 seq114 89.7 5e-13 >seq89 Length=7284382 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26765 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATC 26824 ||| ||||| | || || || || | ||||| ||| | |||||| | || | ||| | Sbjct 2822655 CAACATGCAGATCTTCGTGAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTGGAACC 2822596 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | |||||||||||| | ||||| ||||| ||||| || || || || || || Sbjct 2822595 CAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGA 2822536 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTA 26944 ||| || || || || | | ||||| || || ||||||| | | | | ||||| Sbjct 2822535 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTA 2822476 Query 26945 TAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||| || || || || ||| ||||||| |||||| | || |||||||| Sbjct 2822475 CAACATCCAGAAGGAGTCCACTCTCCATCTTGTCCTGCGCCTGAGAGGAGG 2822425 >seq114 Length=3819349 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | ||||| || | |||||| | || | ||| | | Sbjct 3316443 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGT 3316384 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||| ||| | || || ||||| ||||||||||| || ||||||||||| Sbjct 3316383 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 3316324 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||||| || || ||||||| | | | | ||||| ||| Sbjct 3316323 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 3316264 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || || || | |||||||| ||| | || || ||||| Sbjct 3316263 ATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTGAGGGGAGG 3316217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478589487749920