Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq1 109 1e-18 >seq1 Length=54145758 Score = 109 bits (120), Expect = 1e-18 Identities = 127/168 (76%), Gaps = 4/168 (2%) Strand=Plus/Plus Query 111389 TACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACG 111448 ||||||||| || || || | |||||| ||| || |||||||||| ||||||||||| Sbjct 34287003 TACAAATGCCAAAGAGCTCTCTGCAAAAGGTGTGAAGATTTGGGATGCCAATGGATCACG 34287062 Query 111449 TGACTTTCTAGAT--TCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTT 111506 ||| || || ||| ||| ||| ||| | || ||||| || || | ||||||||| Sbjct 34287063 TGAGTTCCTGGATAAGCAG-GGGTTTTG-CACCAGAGAAGAGGGGGACTTGGGACCAGTT 34287120 Query 111507 TACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCAC 111554 || || || || ||| | |||||||| ||||| |||||| ||||||| Sbjct 34287121 TATGGTTTCCAGTGGAGGCACTTTGGAGCAGAATACAAAGACATGCAC 34287168 Score = 87.8 bits (96), Expect = 5e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 22499 TTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGC 22558 |||| ||||||| ||||||||||| |||||||| || ||||| ||| || ||||||| Sbjct 8045311 TTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCTGCTATATTTTGGC 8045370 Query 22559 TaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATG 22618 | || || | | | ||||| || | || ||||| ||||| | |||||| |||||| Sbjct 8045371 TGAAGAAGAGGGGCCTAATGCCTGGATTGACTTTTTCCAATGAACTTATTAGCAGAGATG 8045430 Query 22619 AGG 22621 ||| Sbjct 8045431 AGG 8045433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303150103329452