Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq1 109 1e-18
>seq1
Length=54145758
Score = 109 bits (120), Expect = 1e-18
Identities = 127/168 (76%), Gaps = 4/168 (2%)
Strand=Plus/Plus
Query 111389 TACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACG 111448
||||||||| || || || | |||||| ||| || |||||||||| |||||||||||
Sbjct 34287003 TACAAATGCCAAAGAGCTCTCTGCAAAAGGTGTGAAGATTTGGGATGCCAATGGATCACG 34287062
Query 111449 TGACTTTCTAGAT--TCAGTTGGTCTTGTCGACAACGAAGAAGGTGATCTCGGACCAGTT 111506
||| || || ||| ||| ||| ||| | || ||||| || || | |||||||||
Sbjct 34287063 TGAGTTCCTGGATAAGCAG-GGGTTTTG-CACCAGAGAAGAGGGGGACTTGGGACCAGTT 34287120
Query 111507 TACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCAC 111554
|| || || || ||| | |||||||| ||||| |||||| |||||||
Sbjct 34287121 TATGGTTTCCAGTGGAGGCACTTTGGAGCAGAATACAAAGACATGCAC 34287168
Score = 87.8 bits (96), Expect = 5e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 22499 TTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATCTTTTGGC 22558
|||| ||||||| ||||||||||| |||||||| || ||||| ||| || |||||||
Sbjct 8045311 TTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCTGCTATATTTTGGC 8045370
Query 22559 TaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGCCGAGATG 22618
| || || | | | ||||| || | || ||||| ||||| | |||||| ||||||
Sbjct 8045371 TGAAGAAGAGGGGCCTAATGCCTGGATTGACTTTTTCCAATGAACTTATTAGCAGAGATG 8045430
Query 22619 AGG 22621
|||
Sbjct 8045431 AGG 8045433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303150103329452
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |