Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq114 89.7 4e-13
seq89 84.2 2e-11
>seq114
Length=3819349
Score = 89.7 bits (98), Expect = 4e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || | ||||| || | || ||| | || || || |||
Sbjct 3316443 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGT 3316384
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| ||| | || || ||||| |||||||||||||| |||||||||||
Sbjct 3316383 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 3316324
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147
||||| ||||| | | |||||||| || |||||||
Sbjct 3316323 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATG 3316287
Score = 86.0 bits (94), Expect = 5e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| ||||| || ||||| || | || ||| | || || || |||
Sbjct 3316215 ATGCAGATCTTTGTGAAAACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGT 3316156
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | || || ||||| |||||||||||||| || || |||||
Sbjct 3316155 GACACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGATCAG 3316096
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145
||||| ||||| | || |||||||| || |||||
Sbjct 3316095 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGA 3316061
>seq89
Length=7284382
Score = 84.2 bits (92), Expect = 2e-11
Identities = 115/161 (71%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046
||| ||||| | || || || || | ||||| ||| | || ||| | || || || |
Sbjct 2822655 CAACATGCAGATCTTCGTGAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTGGAACC 2822596
Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106
|| |||||||||||| | ||||| ||||| ||||| || ||||| || || ||
Sbjct 2822595 CAGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGA 2822536
Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATG 24147
||| ||||| ||||| | | |||||||| || |||||||
Sbjct 2822535 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATG 2822495
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429872147248830
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |