Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq114 107 2e-18 seq84 104 2e-17 seq89 98.7 9e-16 >seq114 Length=3819349 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | | |||||||| | ||| | ||| |||||||| || |||||||| || Sbjct 3315987 AGCCACCCCTGAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 3316046 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || ||||||| ||| || ||||||||||| ||| |||| | | |||||| || || | Sbjct 3316047 ACAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGG 3316106 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | || ||||||||||| ||| || ||| | | || | || || ||| || | Sbjct 3316107 GAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCAA 3316166 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | ||||| || || |||||||| Sbjct 3316167 CCTCAAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 3316215 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||||||| | ||| | ||| |||||||| || |||||||| || || ||||||| Sbjct 3316229 CGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 3316288 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| || |||| | | |||||| || ||||| || ||||||||| Sbjct 3316289 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTG 3316348 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||| | | ||| | || || ||| || | || | ||| | | Sbjct 3316349 TCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATG 3316408 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || || || || |||||||| Sbjct 3316409 GTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3316443 >seq84 Length=273125 Score = 104 bits (114), Expect = 2e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 145676 ACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTC 145735 || || || | ||||| ||||| ||||||||||| |||| || |||||||| |||||| Sbjct 176927 ACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTGCTTTTC 176986 Query 145736 CTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACG 145795 |||||||| | ||| ||||| |||||||| || ||||||||| ||||| ||| | | Sbjct 176987 CTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGTGCCAGTCTCTGTCTGCGACTCGATG 177046 Query 145796 AT 145797 || Sbjct 177047 AT 177048 >seq89 Length=7284382 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || | || ||||| || | ||| | || |||||||| || |||||||| || Sbjct 2822424 GCCTCCTCTCAGGCGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 2822483 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || ||||||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 2822484 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 2822543 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || || || ||||| ||| || ||||| | ||| | || || ||| || | Sbjct 2822544 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCAC 2822603 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | |||||| || || || || || ||||| ||||||||| Sbjct 2822604 CTCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 2822652 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||||| | || | ||| |||||||| || |||||||| || | Sbjct 2821969 CCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2822028 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || ||||||||||| || |||| | | |||||| || || || Sbjct 2822029 AGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 2822088 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || || ||| || | Sbjct 2822089 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACC 2822148 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || ||||| |||||||| Sbjct 2822149 TCCAAGGTTATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2822195 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 |||||||| | || | ||| |||||||| || |||||||| || || ||||| | Sbjct 2822209 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCG 2822268 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || ||||||||||| ||| |||| | | |||||| || || || || || || ||| Sbjct 2822269 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTG 2822328 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||| | | ||| | || || ||| ||| | || | || | | Sbjct 2822329 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGTCTCAACCTCCAGAGTGATG 2822388 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || ||||| || | || || || || ||||||||| || Sbjct 2822389 GTCTTACCCGTCAAGGTCTTCACAAAGATCTGCATGCCT 2822427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471940900650240