Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq114 105 5e-18
seq89 104 2e-17
>seq114
Length=3819349
Score = 105 bits (116), Expect = 5e-18
Identities = 162/229 (71%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| | || | ||| |||| |||||| ||||||||||| || ||||||||||| | |
Sbjct 3316217 CCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3316276
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | || |||| || ||||| ||| | || |||| ||| || || |||
Sbjct 3316277 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 3316336
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||| |||||||| || || || |||||| | | | ||||| | ||| ||
Sbjct 3316337 ATGCCTTCTTTGTCTTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCACTGGGTTCAA 3316394
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||||||| || || ||||| || || ||||| ||||||||
Sbjct 3316395 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3316443
Score = 98.7 bits (108), Expect = 8e-16
Identities = 152/215 (71%), Gaps = 4/215 (2%)
Strand=Plus/Plus
Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782
||| |||| |||||| ||||||||||| || ||||||||||| | || ||| ||||
Sbjct 3316003 CAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 3316062
Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842
|||| || ||||| || | || |||| ||| || || || | ||| ||||||||
Sbjct 3316063 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCTTTGTC 3316122
Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900
|| || || |||||| | | | ||||| | ||| || || | |||||||
Sbjct 3316123 TTGGATCTTGGC--CTTCACATTTTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATG 3316180
Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| || || |||| ||||| ||||| ||||||||
Sbjct 3316181 GTCTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 3316215
>seq89
Length=7284382
Score = 104 bits (114), Expect = 2e-17
Identities = 164/233 (70%), Gaps = 4/233 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||||| || | ||| || | ||| || ||||||||||| || ||||||||||| | |
Sbjct 2822425 CCTCCTCTCAGGCGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2822484
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | || |||| || ||||| ||| | || |||| ||| || || ||
Sbjct 2822485 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 2822544
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| |||||| ||||| || || || ||| || | | | ||||| | ||| |||
Sbjct 2822545 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACATTCTCGATGGTGTCACTGGGTTCCA 2822602
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
|||| |||||||||||| || ||||| || || || || |||||||| |||
Sbjct 2822603 CCTCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTTG 2822655
Score = 96.9 bits (106), Expect = 3e-15
Identities = 166/237 (70%), Gaps = 7/237 (3%)
Strand=Plus/Plus
Query 16702 CATTTACC-CTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGT 16760
|| ||||| | |||| || | ||| |||| ||||| ||||||||||| || |||||||
Sbjct 2821963 CAGTTACCACCCCTC--AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGT 2822020
Query 16761 AGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGT 16820
|||| | || || |||| |||| || ||||| ||| | || |||| ||| || |
Sbjct 2822021 AGTCAGACAGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGAT 2822080
Query 16821 CCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCC 16878
| || | |||||| ||||| || || || |||||| | | | ||||| |
Sbjct 2822081 CAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACT 2822138
Query 16879 GGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||| ||| |||| ||| ||||| || || ||||| || || || || ||||||||
Sbjct 2822139 GGGTTCCACCTCCAAGGTTATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2822195
Score = 89.7 bits (98), Expect = 4e-13
Identities = 159/230 (69%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
|||||| | || | ||| |||| ||||| ||||||||||| || ||||||||||| |
Sbjct 2822196 CCCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2822255
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
|| || |||| |||| || ||||| || | || |||| ||| || || ||
Sbjct 2822256 CAGAGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGG 2822315
Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885
| |||||| ||||| || || || |||||| | | | ||||| | || |||
Sbjct 2822316 AATGCCCTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGTCTCA 2822373
Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| |||||||| || || |||| || || ||||| ||||||||
Sbjct 2822374 ACCTCCAGAGTGATGGTCTTACCCGTCAAGGTCTTCACAAAGATCTGCAT 2822423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405027837596140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |