Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq114 105 5e-18 seq89 104 2e-17 >seq114 Length=3819349 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | || | ||| |||| |||||| ||||||||||| || ||||||||||| | | Sbjct 3316217 CCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3316276 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| || ||||| ||| | || |||| ||| || || ||| Sbjct 3316277 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 3316336 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| || || || |||||| | | | ||||| | ||| || Sbjct 3316337 ATGCCTTCTTTGTCTTGGATCTTGGC--CTTCACGTTCTCAATGGTGTCACTGGGTTCAA 3316394 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || ||||| || || ||||| |||||||| Sbjct 3316395 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3316443 Score = 98.7 bits (108), Expect = 8e-16 Identities = 152/215 (71%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 16723 CAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTC 16782 ||| |||| |||||| ||||||||||| || ||||||||||| | || ||| |||| Sbjct 3316003 CAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 3316062 Query 16783 CTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC 16842 |||| || ||||| || | || |||| ||| || || || | ||| |||||||| Sbjct 3316063 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCTTTGTC 3316122 Query 16843 --GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || || || |||||| | | | ||||| | ||| || || | ||||||| Sbjct 3316123 TTGGATCTTGGC--CTTCACATTTTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATG 3316180 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || || |||| ||||| ||||| |||||||| Sbjct 3316181 GTCTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 3316215 >seq89 Length=7284382 Score = 104 bits (114), Expect = 2e-17 Identities = 164/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||||| || | ||| || | ||| || ||||||||||| || ||||||||||| | | Sbjct 2822425 CCTCCTCTCAGGCGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2822484 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | || |||| || ||||| ||| | || |||| ||| || || || Sbjct 2822485 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 2822544 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || ||| || | | | ||||| | ||| ||| Sbjct 2822545 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTGACATTCTCGATGGTGTCACTGGGTTCCA 2822602 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 |||| |||||||||||| || ||||| || || || || |||||||| ||| Sbjct 2822603 CCTCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTTG 2822655 Score = 96.9 bits (106), Expect = 3e-15 Identities = 166/237 (70%), Gaps = 7/237 (3%) Strand=Plus/Plus Query 16702 CATTTACC-CTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGT 16760 || ||||| | |||| || | ||| |||| ||||| ||||||||||| || ||||||| Sbjct 2821963 CAGTTACCACCCCTC--AGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGT 2822020 Query 16761 AGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGT 16820 |||| | || || |||| |||| || ||||| ||| | || |||| ||| || | Sbjct 2822021 AGTCAGACAGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGAT 2822080 Query 16821 CCACAGGCACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCC 16878 | || | |||||| ||||| || || || |||||| | | | ||||| | Sbjct 2822081 CAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACT 2822138 Query 16879 GGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| ||| |||| ||| ||||| || || ||||| || || || || |||||||| Sbjct 2822139 GGGTTCCACCTCCAAGGTTATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2822195 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 |||||| | || | ||| |||| ||||| ||||||||||| || ||||||||||| | Sbjct 2822196 CCCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2822255 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || |||| |||| || ||||| || | || |||| ||| || || || Sbjct 2822256 CAGAGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGG 2822315 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||| ||||| || || || |||||| | | | ||||| | || ||| Sbjct 2822316 AATGCCCTCCTTGTCCTGGATCTTGGC--CTTCACATTCTCAATGGTGTCACTGGTCTCA 2822373 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || |||| || || ||||| |||||||| Sbjct 2822374 ACCTCCAGAGTGATGGTCTTACCCGTCAAGGTCTTCACAAAGATCTGCAT 2822423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405027837596140