Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq89 114 9e-21 seq114 98.7 7e-16 seq30 84.2 1e-11 >seq89 Length=7284382 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || |||| |||| ||||| || || ||| |||||| || || ||||| |||||| Sbjct 2822197 CCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2822256 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | ||| |||| || | || || || || || || || | || ||||||| ||| Sbjct 2822257 AGAGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 2822316 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || ||||||||||| | || || | | ||||| Sbjct 2822317 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGTCTCAACC 2822376 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || |||||||||||||| ||||| || ||||||||| Sbjct 2822377 TCCAGAGTGATGGTCTTACCCGTCAAGGTCTTCACAAAGATCTGCATG 2822424 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38088 TTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCA 38147 |||||||| |||| |||| ||||| || || ||| |||||| || || ||||| ||| Sbjct 2821966 TTACCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCA 2822025 Query 38148 GACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAG 38207 |||| | || |||| || | || || || ||||| || || | || ||||| | | Sbjct 2822026 GACAGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGG 2822085 Query 38208 GGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCA 38267 || | ||| || |||||| || || ||||||||||| | || || | ||| Sbjct 2822086 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCC 2822145 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || || |||| ||| |||||||| |||||||| Sbjct 2822146 ACCTCCAAGGTTATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2822195 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||||| |||| || | ||| |||||| |||||| || || ||||| |||||| Sbjct 2822425 CCTCCTCTCAGGCGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2822484 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || || ||||| || || | || ||||| | ||| Sbjct 2822485 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 2822544 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || || ||| ||||||| || || || | ||| || Sbjct 2822545 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACC 2822604 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || || ||||| || |||| ||| |||||||| ||||||||||| Sbjct 2822605 TCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTT 2822654 >seq114 Length=3819349 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| || | |||| ||||| ||| || ||| |||||| || || ||||| |||||| Sbjct 3315989 CCACCCCTGAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3316048 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || || || || || || | || ||||| | ||| Sbjct 3316049 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGA 3316108 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||||||||| || || ||||||||| | | || || | |||||| Sbjct 3316109 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCAACC 3316168 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || |||||||||||||| || |||||||| Sbjct 3316169 TCAAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 3316215 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || |||| |||| ||||| ||| || ||| |||||| || || ||||| |||| Sbjct 3316215 TACCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 3316274 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 ||| || | || || | || || || ||||| || || | || ||||||| | Sbjct 3316275 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAG 3316334 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||||||||| || || |||||| |||| | || || | ||||| Sbjct 3316335 GAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAA 3316394 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || |||| ||| ||||| || |||||||| Sbjct 3316395 CCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3316443 >seq30 Length=9832349 Score = 84.2 bits (92), Expect = 1e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||| |||||||||| ||||||| |||| ||||||||| | | Sbjct 824861 CTCTCTCTTCAAAGTTCTTTTTAACTTTCCCTTACGGTACCTGTTGGCTATCGGTTCCAC 824920 Query 20007 GGTAATATT 20015 | | ||||| Sbjct 824921 GCTGATATT 824929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334897454688566