Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq114 104 2e-17
>seq114
Length=3819349
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| |||| || || ||||||| | || || || | |
Sbjct 3316443 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGT 3316384
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| ||||| || ||| ||||||||||| ||||| || || ||
Sbjct 3316383 GACACCATTGAGAACGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCCGATCAG 3316324
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||| ||||| || | ||||||| ||||| || || |||||
Sbjct 3316323 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 3316264
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || ||||| || ||| | ||||| | || || |||||
Sbjct 3316263 ATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTGAGGGGAGG 3316217
Score = 91.5 bits (100), Expect = 1e-13
Identities = 160/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || ||||| || || ||||||| | || || || | |
Sbjct 3316215 ATGCAGATCTTTGTGAAAACCTTGACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGT 3316156
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || ||||| || ||| ||||||||||| ||||| ||||| ||
Sbjct 3316155 GACACCATTGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCCCCTGATCAG 3316096
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || || || ||||| || | ||||| | ||||| || || |||||
Sbjct 3316095 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGGCGCACCCTGTCTGACTACAAC 3316036
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231
|| || || || ||||| || ||| | ||||| | || || || || ||||
Sbjct 3316035 ATCCAGAAGGAGTCCACCCTGCATCTGGTGCTGCGCCTCAGGGGTGGCTATTA 3315983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433263643479590
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |