Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq2 93.3 5e-14
>seq2
Length=38276455
Score = 93.3 bits (102), Expect = 5e-14
Identities = 87/111 (78%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 93353 GAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATT 93412
|||||| ||||| || || |||| ||| |||||||| ||||| | ||| |||||
Sbjct 2052497 GAATCTTTGATGTACGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTTTCCATG 2052556
Query 93413 GCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGA 93463
||||| ||||| || |||||||| | ||||| ||||| ||||||||||||
Sbjct 2052557 GCAATCTGGAAGCCATAGAAACAACGTGCTTCTGTGATTTGCACTTCTTGA 2052607
Score = 82.4 bits (90), Expect = 8e-11
Identities = 68/83 (82%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 93164 CCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACG 93223
|||| |||||| |||||||| ||||| |||||| |||||||| || || ||||||||
Sbjct 2050925 CCTCTTTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACT 2050984
Query 93224 GCTGCAAATGCCACAATACGTTC 93246
||||||||||| || | |||||
Sbjct 2050985 GCTGCAAATGCTACTACTCGTTC 2051007
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556775976178640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |