Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq89 104 2e-17 >seq89 Length=7284382 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || ||||| || ||||||| || || || |||| Sbjct 2822423 ATGCAGATCTTTGTGAAGACCTTGACGGGTAAGACCATCACTCTGGAGGTTGAGACCAGT 2822364 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || ||||||||||| ||||| |||||||| Sbjct 2822363 GACACCATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCCGATCAG 2822304 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || || ||||| ||| | || || ||||| | || || |||||| Sbjct 2822303 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGACGGACGCACTCTGTCTGACTACAAC 2822244 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | || | || |||| || | ||||| Sbjct 2822243 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGAGGGGAGG 2822197 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || || || || | || || ||||| |||| | || |||||| || Sbjct 2822654 AACATGCAGATCTTCGTGAAGACCCTGACTGGCAAAACCATCACCTTGGAGGTGGAACCC 2822595 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || || ||||||||||| ||||| || ||| Sbjct 2822594 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCTGAT 2822535 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||| ||||| ||| | || ||| |||||| | || || ||| Sbjct 2822534 CAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTAC 2822475 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || ||||| | ||| | || |||| || | ||||| Sbjct 2822474 AACATCCAGAAGGAGTCCACTCTCCATCTTGTCCTGCGCCTGAGAGGAGG 2822425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419665663309090