Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 1e-13 >seq1 Length=54145758 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || || ||||| || | ||| || || | || |||||||||||||| || ||||| Sbjct 34290834 AGCCCTGTGACATGGGCTATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 34290775 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACC 20349 ||||| | ||||| ||||| |||||||||||||| ||||| || || || || Sbjct 34290774 ACTCCTAGTCCCATATCTCCAGACCTCTGATACAGTTGACAAGACAGTTCGCC 34290722 Score = 84.2 bits (92), Expect = 2e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 20534 GCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGC 20593 || ||||||||||||||||||||||| ||||| |||||||| |||||||| |||| | Sbjct 34287149 GCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAGTCCCCCTCTTCTCTG-GT 34287091 Query 20594 GCCAGGCCGC-GCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCC 20652 || | || | || |||||||||| | || ||||| ||||| ||||| || || Sbjct 34287090 GCAAAACCCCTGCTTATCCAGGAACTCACGTGATCCATTGGCATCCCAAATCTTCACACC 34287031 Query 20653 TGTTCTTGAAAGCTC 20667 | || || ||||| Sbjct 34287030 TTTTGCAGAGAGCTC 34287016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441305567888240