Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq114 100 2e-16
seq89 100 2e-16
>seq114
Length=3819349
Score = 100 bits (110), Expect = 2e-16
Identities = 103/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
|||||| ||||| |||||||||||||| || ||| ||||||||| |||||||| || |
Sbjct 3316216 ACCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 3316275
Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
|| ||| | || |||| |||||||| ||||| ||||| | ||||||||| ||
Sbjct 3316276 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGG 3316335
Query 34020 CACGCTCTCTTTGTC 34034
| || ||||||||
Sbjct 3316336 AATGCCTTCTTTGTC 3316350
Score = 89.7 bits (98), Expect = 4e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
|| || || || |||||||||||||| || ||| ||||||||| |||||||| || | |
Sbjct 3315989 CCACCCCTGAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3316048
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| ||| |||| |||| |||||||| || || ||||| | ||||||||| ||
Sbjct 3316049 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGA 3316108
Query 34021 ACGCTCTCTTTGTC 34034
| || ||||||||
Sbjct 3316109 ATGCCTTCTTTGTC 3316122
>seq89
Length=7284382
Score = 100 bits (110), Expect = 2e-16
Identities = 106/137 (77%), Gaps = 2/137 (1%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
||| || ||||| ||||||||||| || || ||| ||||||||| |||||||| || |
Sbjct 2821968 ACCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 2822027
Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018
|| | || ||| |||| |||| |||||||| ||||| ||||| | ||||||||| |
Sbjct 2822028 CAGAGTG-CGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 2822086
Query 34019 GCACGCTCTCTTTGTCC 34035
| | || ||| ||||||
Sbjct 2822087 GAATGCCCTCCTTGTCC 2822103
Score = 95.1 bits (104), Expect = 1e-14
Identities = 104/136 (76%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| ||||| ||||||||||| || || ||| ||||||||| |||||||| || | |
Sbjct 2822197 CCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2822256
Query 33961 A-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019
| | || || |||| |||| |||||||| || || ||||| | ||||||||| ||
Sbjct 2822257 AGAGTG-CGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGG 2822315
Query 34020 CACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 2822316 AATGCCCTCCTTGTCC 2822331
Score = 95.1 bits (104), Expect = 1e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||||||||| ||||| || ||||| || ||| ||||||||| |||||||| || | |
Sbjct 2822425 CCTCCTCTCAGGCGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2822484
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020
| ||| | || |||| |||||||| ||||| ||||| | ||||||||| ||
Sbjct 2822485 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 2822544
Query 34021 ACGCTCTCTTTGTCC 34035
| || ||| ||||||
Sbjct 2822545 ATGCCCTCCTTGTCC 2822559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397003429533172
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |