Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq114 122 2e-22
seq89 107 5e-18
>seq114
Length=3819349
Score = 122 bits (134), Expect = 2e-22
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||| | || || ||||| | ||| || || ||||| || ||||| |
Sbjct 3315989 CCACCCCTGAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3316048
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| |||||||| | || || || ||||||||||| | ||| ||| | ||
Sbjct 3316049 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGA 3316108
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| |||||||| || ||||| || || ||||| ||||| || | || || | ||| ||
Sbjct 3316109 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCAACC 3316168
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| ||||| || |||| || || || || ||||||||
Sbjct 3316169 TCAAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 3316215
>seq89
Length=7284382
Score = 107 bits (118), Expect = 5e-18
Identities = 141/194 (73%), Gaps = 6/194 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| | || |||||||||||||| | || || || ||||||
Sbjct 2822233 TCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAG 2822292
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
||||| | ||| || ||| ||| || || || || |||||||| || || |||||
Sbjct 2822293 ATCAGCCTCTGCTG---ATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACA 2822349
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
|| || || | || || | || || || || ||||| ||||| || |||| |||||
Sbjct 2822350 TTCTCAATGGTGTCACTGGTCTCAACCTCCAGAGTGATGGTCTTACCCGTCAAGGTCTTC 2822409
Query 288460 ACGAATATCTGCAT 288473
|| || ||||||||
Sbjct 2822410 ACAAAGATCTGCAT 2822423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179470216872108
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |