Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq89 127 2e-24
seq49 96.9 4e-15
seq22 89.7 6e-13
seq47 86.0 7e-12
seq114 84.2 2e-11
>seq89
Length=7284382
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041
|||||||| | |||| || | ||| | ||| |||||| || || ||||| |||| |
Sbjct 2822425 CCTCCTCTCAGGCGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2822484
Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101
|| || ||| | || || |||||||| ||||| || || || | |||||| || | ||
Sbjct 2822485 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 2822544
Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161
| || |||||||||| ||| || |||| || | | ||||| || | ||||||
Sbjct 2822545 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACC 2822604
Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211
|| | |||||||||||||| || || ||||| || ||||| ||||| ||
Sbjct 2822605 TCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTT 2822654
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 2824139 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2824198
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 2824199 TACTAACGAGGA 2824210
>seq49
Length=8165964
Score = 96.9 bits (106), Expect = 4e-15
Identities = 68/78 (87%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063
||||||| || | | |||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 2829017 TTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 2828958
Query 57064 CTATACTACCGAGGATTG 57081
|||||||| |||||| ||
Sbjct 2828957 CTATACTAACGAGGAGTG 2828940
>seq22
Length=12138678
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 5456275 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5456216
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 5456215 TACTAACGAGGA 5456204
Score = 89.7 bits (98), Expect = 6e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 5456922 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5456863
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 5456862 TACTAACGAGGA 5456851
>seq47
Length=5896676
Score = 86.0 bits (94), Expect = 7e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| || | | |||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 2004894 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 2004835
Query 57067 TACTACCGAGGA 57078
||||| ||||||
Sbjct 2004834 TACTAACGAGGA 2004823
>seq114
Length=3819349
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
|||||| || | |||| ||||||||||| ||| |||||| || || ||||| ||||
Sbjct 3316444 ACCTCCCCTCAGGCGCAGCACCAAATGCAGGGTGGACTCCTTCTGTATGTTGTAGTCAGA 3316503
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGG 42096
||| || || | || || |||||||| ||||| || || || | |||||| ||||
Sbjct 3316504 CAGGGTGCGTCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGG 3316559
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543130055110240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |