Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq114 131 2e-25
seq89 122 9e-23
>seq114
Length=3819349
Score = 131 bits (144), Expect = 2e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| ||||| | || || || || || |||||||| || | | ||||||| |||||
Sbjct 3316004 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 3316063
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| || | || |||| |||||| || || ||||| |||||||| |||
Sbjct 3316064 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCTTTGTCT 3316123
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | || |||| || || || || | || | ||||
Sbjct 3316124 TGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTC 3316183
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| ||||| ||||| || || || |||||
Sbjct 3316184 TTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 3316215
Score = 131 bits (144), Expect = 2e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| ||||| | || || || || || |||||||| || | | ||||||| | |||
Sbjct 3316232 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 3316291
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| ||| | || |||| |||||| ||||||||||| |||||||| |||
Sbjct 3316292 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCT 3316351
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| || ||| | || |||| || || || || | || | ||||
Sbjct 3316352 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTC 3316411
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| |||| || || || || || |||||
Sbjct 3316412 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3316443
>seq89
Length=7284382
Score = 122 bits (134), Expect = 9e-23
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| || || | || || || || || |||||||| || | | |||||| |||||
Sbjct 2821984 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCT 2822043
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| ||| | || |||| |||||| || || ||||| || || || ||
Sbjct 2822044 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 2822103
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| ||| | || |||| || ||||| || | |||| ||||
Sbjct 2822104 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACCTCCAAGGTTATGGTC 2822163
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||||| |||| || || ||||| || |||||
Sbjct 2822164 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2822195
Score = 113 bits (124), Expect = 5e-20
Identities = 154/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || ||||| | || || || || || |||||||| || | | ||||||| | |||
Sbjct 2822440 AGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2822499
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| ||| | || |||| |||||| || || ||||| || || || ||
Sbjct 2822500 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 2822559
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| ||| | || |||| || ||||| || | || | |||
Sbjct 2822560 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCCAAGGTGATGGTT 2822619
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
||||| |||| || || ||||| || ||||| ||
Sbjct 2822620 TTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTT 2822654
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
||||| || || | || || || || || |||||||| || | | ||||| |||||
Sbjct 2822212 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCGTCT 2822271
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||| || | || |||| |||||| ||||| ||||| || || || ||
Sbjct 2822272 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCC 2822331
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| ||| | || |||| || || || || | ||| | ||||
Sbjct 2822332 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGTCTCAACCTCCAGAGTGATGGTC 2822391
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || ||||| || || || || || |||||
Sbjct 2822392 TTACCCGTCAAGGTCTTCACAAAGATCTGCAT 2822423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499568691605840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |