Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq119 127 3e-24 seq40 100 4e-16 >seq119 Length=1119390 Score = 127 bits (140), Expect = 3e-24 Identities = 168/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || || ||||| | |||||| ||| |||| || || || || ||||| | | ||| ||| Sbjct 530467 GTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAGATATCACAG 530408 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || |||||||||||||| |||||||| || || |||||||||| || || || || ||| Sbjct 530407 ACTCTGTTGTGTTCTCTTAGCCATATTGTTGCATACATCATTAGGCCTGGGACCAAGCCA 530348 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| || | || || | ||| |||| | || || || | || | || | ||| Sbjct 530347 AACACCTCCTGTCCAACAGAAAACTGCAGGTGCTCAGGAACATGAGGAGGGTAGATCATC 530288 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | | || || || || || || || ||||||||||| || ||||| | ||| Sbjct 530287 TCTGCTTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATCTG 530235 Score = 111 bits (122), Expect = 2e-19 Identities = 202/296 (68%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||||||| || ||||| ||| | || || | Sbjct 532692 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 532633 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || ||||| || || ||||||||| | |||| Sbjct 532632 TATTGATTATTTCAAACCCCACTTTTCCACCAAAGGTACTTGGCTTCCAGTACTCAGGGG 532573 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||| || || |||| || ||||||| || ||||| || || | || | || Sbjct 532572 AGCATATTGTATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCGCCAATTTCTACCATTG 532513 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || | || ||||| || | | ||| | || ||||| | Sbjct 532512 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTACAAGAAGGCCTGGATACAGTTCCA 532453 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| || || || |||| | || ||||| || || || || ||| Sbjct 532452 TAGCATCTATGTCTCCGTAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCT 532397 Score = 107 bits (118), Expect = 3e-18 Identities = 164/232 (71%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 ||||| |||||||| | ||| || | | || |||| | ||| | ||| ||||| Sbjct 531884 ATGGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCACGTATCTGAAAAGTG 531825 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 ||||||| ||| | |||||| |||| || |||||||| || || || |||||||||||| Sbjct 531824 TCAGGCAGCAGTGGGTGCCAGTGGTACAGAGTATTGAATTCAGCTGCAATTCGGTTCTGG 531765 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || ||||| | || | ||||||||| | Sbjct 531764 TATTGAAAACGCTGGT--TGAACAGAAGCTCAGGATCAAACTTCAGTTTGAAGTGGTAGC 531707 Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 | || | ||||| || || | | || | || || || ||||| || || Sbjct 531706 CACTCAAGTGCTGCACGTAATCTTCAATAACTATCTTGATCGTTTCTCCTGT 531655 >seq40 Length=8742107 Score = 100 bits (110), Expect = 4e-16 Identities = 204/303 (67%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 8876 ACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTT 8935 || |||||||| | ||||||| |||||| ||| || | ||| || | | | Sbjct 7076042 ACACGGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCTCCAGTGAT 7075983 Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || ||||| || || || | || || ||||| ||||| ||||||||| | Sbjct 7075982 GCTGTCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCCAGTACTCT 7075923 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| ||| | | || || |||| ||||| ||||| || | ||| | Sbjct 7075922 GGGGAGCAGATGGGATTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCGCCAATCTCCACC 7075863 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||||| || || |||||| | ||| | ||||| || | | || || | || | Sbjct 7075862 ATGCTTTCCCCAAAGATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAACCCTGGATAAAAC 7075803 Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||| |||| ||| ||||| || | |||| ||| || || ||| || ||| ||| Sbjct 7075802 TCCAGAGCATCGATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTCTTCTCCTCTCCT 7075743 Query 9176 ACA 9178 || Sbjct 7075742 GCA 7075740 Score = 87.8 bits (96), Expect = 3e-12 Identities = 164/241 (68%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 9718 CCGGTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCG 9777 ||| | | ||| || || | || || || | ||||||||||||||| || || || Sbjct 7074295 CCGATGAGGATGAGCCGCGCTGTCTGGAAGAGCTGCTCGTCACCCCAGGTGGGATGCTCC 7074236 Query 9778 TGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATT 9837 || || |||| || ||||| | |||||| || | |||||| | ||||| ||||| Sbjct 7074235 TGCTTCAGAATGTCACAGACGCGGTTGTGCTCACGCAGCCAGAGCGTGGCATACATGCAG 7074176 Query 9838 AAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACT 9897 | ||||||| | |||||||| || | ||||| ||| | || || | ||| || Sbjct 7074175 AGCCCCGGCAGCAGCCCAAACACCTCCTGCCCCATTGCCAGCTGCTTCTCCTTGGGGACG 7074116 Query 9898 TCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCG 9957 | |||| || | ||| |||||| | ||| |||| | |||||| |||| || ||| Sbjct 7074115 GCAGGCGGGTAGACCATGTGCACCGGCACCTCGGTGACAGAGGGGGGGTACACCTCCCCG 7074056 Query 9958 T 9958 | Sbjct 7074055 T 7074055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723617758132400