Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq119 127 3e-24
seq40 100 4e-16
>seq119
Length=1119390
Score = 127 bits (140), Expect = 3e-24
Identities = 168/233 (72%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795
|| || ||||| | |||||| ||| |||| || || || || ||||| | | ||| |||
Sbjct 530467 GTAGTCTGAAATAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAAGATATCACAG 530408
Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855
|| |||||||||||||| |||||||| || || |||||||||| || || || || |||
Sbjct 530407 ACTCTGTTGTGTTCTCTTAGCCATATTGTTGCATACATCATTAGGCCTGGGACCAAGCCA 530348
Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915
||||| || | || || | ||| |||| | || || || | || | || | |||
Sbjct 530347 AACACCTCCTGTCCAACAGAAAACTGCAGGTGCTCAGGAACATGAGGAGGGTAGATCATC 530288
Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968
| | || || || || || || || ||||||||||| || ||||| | |||
Sbjct 530287 TCTGCTTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATCTG 530235
Score = 111 bits (122), Expect = 2e-19
Identities = 202/296 (68%), Gaps = 0/296 (0%)
Strand=Plus/Minus
Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939
|||| || | || ||||| || ||||||||| || ||||| ||| | || || |
Sbjct 532692 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 532633
Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999
| || | || || || || || | || || ||||| || || ||||||||| | ||||
Sbjct 532632 TATTGATTATTTCAAACCCCACTTTTCCACCAAAGGTACTTGGCTTCCAGTACTCAGGGG 532573
Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059
|||| || || |||| || ||||||| || ||||| || || | || | ||
Sbjct 532572 AGCATATTGTATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCGCCAATTTCTACCATTG 532513
Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119
| ||||| ||||||||||| || | || ||||| || | | ||| | || ||||| |
Sbjct 532512 TTTCACCAAAGATGGCACCTGGTCTTGGCTTTTCTACAAGAAGGCCTGGATACAGTTCCA 532453
Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
||| || | ||| || || || |||| | || ||||| || || || || |||
Sbjct 532452 TAGCATCTATGTCTCCGTAAAGCTCTTCTAGTTCAGCAGCCATTTCTTTTTCTCCT 532397
Score = 107 bits (118), Expect = 3e-18
Identities = 164/232 (71%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552
||||| |||||||| | ||| || | | || |||| | ||| | ||| |||||
Sbjct 531884 ATGGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCACGTATCTGAAAAGTG 531825
Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612
||||||| ||| | |||||| |||| || |||||||| || || || ||||||||||||
Sbjct 531824 TCAGGCAGCAGTGGGTGCCAGTGGTACAGAGTATTGAATTCAGCTGCAATTCGGTTCTGG 531765
Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670
|| ||||| | ||| |||||| | ||| || ||||| | || | ||||||||| |
Sbjct 531764 TATTGAAAACGCTGGT--TGAACAGAAGCTCAGGATCAAACTTCAGTTTGAAGTGGTAGC 531707
Query 9671 CGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722
| || | ||||| || || | | || | || || || ||||| || ||
Sbjct 531706 CACTCAAGTGCTGCACGTAATCTTCAATAACTATCTTGATCGTTTCTCCTGT 531655
>seq40
Length=8742107
Score = 100 bits (110), Expect = 4e-16
Identities = 204/303 (67%), Gaps = 0/303 (0%)
Strand=Plus/Minus
Query 8876 ACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTT 8935
|| |||||||| | ||||||| |||||| ||| || | ||| || | | |
Sbjct 7076042 ACACGGAACGCCACGTACGGACACTTCTTCACGTTGAGGCACACGAGTTTCTCCAGTGAT 7075983
Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995
|| || || ||||| || || || | || || ||||| ||||| ||||||||| |
Sbjct 7075982 GCTGTCTTGACGATCTCGAAGCCGGTTGCTCCACCAAAGGTACTGGGCTTCCAGTACTCT 7075923
Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055
|||||||||||| ||| | | || || |||| ||||| ||||| || | ||| |
Sbjct 7075922 GGGGAGCAGATGGGATTCCCAAGAAGTCCCTTCAGTGAAAATGGAGCGCCAATCTCCACC 7075863
Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115
||||| || || |||||| | ||| | ||||| || | | || || | || |
Sbjct 7075862 ATGCTTTCCCCAAAGATGCCGTTGGGTTGGGGTTTCTCAAGCAGCAACCCTGGATAAAAC 7075803
Query 9116 TCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| | ||| |||| ||| ||||| || | |||| ||| || || ||| || ||| |||
Sbjct 7075802 TCCAGAGCATCGATGTCTCCATACAGCTCCTCCAGCTCTGCTGCCTTCTTCTCCTCTCCT 7075743
Query 9176 ACA 9178
||
Sbjct 7075742 GCA 7075740
Score = 87.8 bits (96), Expect = 3e-12
Identities = 164/241 (68%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 9718 CCGGTAATGATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCG 9777
||| | | ||| || || | || || || | ||||||||||||||| || || ||
Sbjct 7074295 CCGATGAGGATGAGCCGCGCTGTCTGGAAGAGCTGCTCGTCACCCCAGGTGGGATGCTCC 7074236
Query 9778 TGTTTGAGAACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATT 9837
|| || |||| || ||||| | |||||| || | |||||| | ||||| |||||
Sbjct 7074235 TGCTTCAGAATGTCACAGACGCGGTTGTGCTCACGCAGCCAGAGCGTGGCATACATGCAG 7074176
Query 9838 AAACCCGGCACTAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACT 9897
| ||||||| | |||||||| || | ||||| ||| | || || | ||| ||
Sbjct 7074175 AGCCCCGGCAGCAGCCCAAACACCTCCTGCCCCATTGCCAGCTGCTTCTCCTTGGGGACG 7074116
Query 9898 TCGGGCGCATACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCG 9957
| |||| || | ||| |||||| | ||| |||| | |||||| |||| || |||
Sbjct 7074115 GCAGGCGGGTAGACCATGTGCACCGGCACCTCGGTGACAGAGGGGGGGTACACCTCCCCG 7074056
Query 9958 T 9958
|
Sbjct 7074055 T 7074055
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723617758132400
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