Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq84 111 3e-19 >seq84 Length=273125 Score = 111 bits (122), Expect = 3e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 203910 CCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGT 203969 ||| || ||| || || | ||||||| | |||||||| |||||| || || |||| Sbjct 173957 CCTGCTTCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCCGCGATGT 174016 Query 203970 GAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAA 204029 | ||||| ||||| ||||| ||||||||||||| | | ||||| ||||| |||| | Sbjct 174017 GGATGTTGAGAGATTGGCTCTGGTCGATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGA 174076 Query 204030 TGGTCTTCTGCGAAATCTCCCACACCGTCTT 204060 || ||||| || ||||||||||||||||| Sbjct 174077 CAGTTTTCTGGGAGATCTCCCACACCGTCTT 174107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795034077984160