Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq89 154 2e-32 seq114 134 2e-26 seq128 91.5 2e-13 >seq89 Length=7284382 Score = 154 bits (170), Expect = 2e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||||||||| | |||| || ||||| | || |||||| ||||| |||||||| | Sbjct 2822423 TGCCTCCTCTCAGGCGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 2822482 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || |||||| | || || ||||||||||| || || |||| | |||||| || | | Sbjct 2822483 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 2822542 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || |||||||||| |||||| ||||| || | | ||||| || | ||||| Sbjct 2822543 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCA 2822602 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | |||| |||||||||||||| ||||| || || || ||||| ||||| ||| Sbjct 2822603 CCTCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGTTG 2822655 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | |||| |||||| |||| || |||||| ||||| |||||||| || Sbjct 2822197 CCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2822256 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| |||| || ||||||||||| ||||| |||| | |||||| |||| || Sbjct 2822257 AGAGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 2822316 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||||| |||||| ||| | || | | ||||| || | || || Sbjct 2822317 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGTCTCAACC 2822376 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || ||||||| || || |||||||| ||||| Sbjct 2822377 TCCAGAGTGATGGTCTTACCCGTCAAGGTCTTCACAAAGATCTGCAT 2822423 Score = 145 bits (160), Expect = 9e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || |||||| ||||| |||||||| || ||||||||| || Sbjct 2821981 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCG 2822040 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||| || || |||| | |||||| || | || | || ||||||| Sbjct 2822041 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTG 2822100 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||| | || | | ||||| || | |||||| |||| || ||| Sbjct 2822101 TCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACCTCCAAGGTTATG 2822160 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || || || ||||| ||||| Sbjct 2822161 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2822195 >seq114 Length=3819349 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | |||| ||||||||||| || |||||| ||||| |||||||| || Sbjct 3316217 CCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3316276 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || |||||| | || || ||||||||||| || || |||| | |||||| |||| || Sbjct 3316277 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 3316336 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || || ||||| |||||| ||| | || | | ||||| || | ||| || Sbjct 3316337 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACC 3316396 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| ||||| || || |||||||| ||||| Sbjct 3316397 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3316443 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | |||| ||||||||||| || |||||| ||||| |||||||| || Sbjct 3315988 GCCACCCCTGAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 3316047 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || |||||| |||| || ||||||||||| ||||| |||| | |||||| || | || Sbjct 3316048 CAGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGG 3316107 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 46545 | || || ||||| |||||| ||| | | | | ||||| || | ||| || Sbjct 3316108 AATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCAAC 3316167 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| |||| ||||| |||||||| ||||| Sbjct 3316168 CTCAAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 3316215 >seq128 Length=525773 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 46493 TCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACC 46552 ||||||||| |||||| ||||| || | | ||||| | | |||||| |||| Sbjct 40173 TCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCATTGGGTTCCACCTCCAAG 40114 Query 46553 GTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||||||||||||||||||||||| || |||||||| ||||||||| Sbjct 40113 GTGATGGTTTTGCCCGTCAGCGTCTTCACAAAGATCTGCATTTTG 40069 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565152300060720