Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq5 104 9e-17 seq40 87.8 7e-12 >seq5 Length=36382235 Score = 104 bits (114), Expect = 9e-17 Identities = 391/603 (65%), Gaps = 18/603 (3%) Strand=Plus/Plus Query 451898 GAAATTGTGCTTGTAGGAGGTTCTACACGAATTCCTAAAATTCAAGATATGTTGT----C 451953 || |||||||| || || || || || || |||||||| || || | || || | Sbjct 989631 GAGATTGTGCTCGTGGGGGGCTCCACTCGTATTCCTAAGATCCAGAAGTTGCTGCAGGAC 989690 Query 451954 TTCTTATTTTGGAGGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATA 452013 ||||| | || ||| | || |||||| | ||||| |||||||||||||| || Sbjct 989691 TTCTTCAAT----GGCAAAGAGCTCAACAAGAGCATCAATCCAGATGAAGCTGTTGCTTA 989746 Query 452014 TGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCAGATGATGAAAAATTAGGAGATAT 452073 |||||| || || |||||||||||||| | ||| | |||||| | |||| | Sbjct 989747 TGGTGCGGCTGTGCAAGCAGCTATTCTCATGGGTGACAAGTCTGAAAATGTGCAAGATCT 989806 Query 452074 TCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGAC 452133 || | | ||||| || || || || || || | || |||||||||||| ||||||| Sbjct 989807 GCTCCTGTTGGATGTCACCCCCCTGTCCCTGGGCATCGAGACAGCTGGTGGAGTGATGAC 989866 Query 452134 TAATTTAATTAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGC 452193 | | | || || || || | ||||| ||| | | || || || | || | Sbjct 989867 TGCTCTCATCAAGCGTAACACCACCATTCCCACCAAACAAACGCAGACCTTCA--CCACC 989924 Query 452194 AAGT--GATAACCA-ACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGAC 452250 | | || ||||| | || |||| | || |||| |||||| || | || ||||| Sbjct 989925 TACTCAGACAACCAGAGCA-GTGTCTTAGTCCAGGTGTATGAAGGTGAGAGGGCTATGAC 989983 Query 452251 ACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGG 452310 | || || ||| || || | ||| || | ||| || || || | || Sbjct 989984 AAAGGACAACAATTTGCTGGGCAAGTTTGACCTAACGGGCATCCCCCCAGCACCCCGTGG 990043 Query 452311 AACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGC 452370 | ||||| || || | || | || | ||||| |||||||| || ||||| ||||| Sbjct 990044 AGTCCCTCAGATCGAGGTAACTTTCGACATAGATGCTAATGGTATCCTGAATGTCAGTGC 990103 Query 452371 AGTTGAAAAATCATCTGGAAAATCAGAA-AAAATTACAATTACTAATGATAAAAACCG-T 452428 || || || | || ||| |||| || || || || || ||||| || || Sbjct 990104 TGTGGACAAGAGTACAGGGAAA-GAGAACAAGATAACCATCACCAATGACAAGGGTCGCC 990162 Query 452429 TTATCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGAT 452488 ||| | ||||| |||||||| ||||| | || ||||| |||| ||| | || ||| Sbjct 990163 TTAGC-AAAGATGATATTGACCGTATGGTGCAAGAGGCAGAGAAATACAAAGCAGAGGAT 990221 Query 452489 GAA 452491 ||| Sbjct 990222 GAA 990224 Score = 86.0 bits (94), Expect = 2e-11 Identities = 458/722 (63%), Gaps = 21/722 (3%) Strand=Plus/Plus Query 450896 ATGTCTGTCAAAAAAGTAGCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGT 450955 ||||||| |||| || || || || ||||| || ||||| | ||| || || ||| Sbjct 988626 ATGTCTGGCAAAGGGCCGGCCATCGGCATCGATCTGGGCACCACGTATTCCTGCGTGGGT 988685 Query 450956 GTTTACCAAAATGGAAATGTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCT 451015 || | ||| |||| || || || || || || || ||||| || || || || || Sbjct 988686 GTCTTCCAGCATGGCAAAGTGGAGATCATCGCCAACGACCAGGGGAACCGCACCACACC- 988744 Query 451016 TCATGGGTAAGT----TTTACGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCA 451069 || | || || || || ||| |||| | || | ||| | ||||| || | || Sbjct 988745 -CA--GCTATGTGGCCTTCACCGATACAGAGCGCCTCATCGGGGATGCTGCCAAGAACCA 988801 Query 451070 ATGGTAAATTCAAATGCCAAAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATG 451129 | | ||| || ||| ||||| | | ||||| || ||| | || ||||| | | Sbjct 988802 AGTGGCAATG--AACCCCACCAACACCATCTTCGATGCCAAGCGTCTCATCGGCCGCAAG 988859 Query 451130 TATGATGATGATACTGTACAAAAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAA 451189 || ||||| || || || ||| | || || | | ||| || || | Sbjct 988860 TACGATGACCCCACGGTGCAGTCAGACATGAAGCACTGGCCCTTCCGTGTGGTGAACGAG 988919 Query 451190 AAAGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAA 451249 | || |||||| | | ||||| | || || || || | || || ||| || || Sbjct 988920 AGCGGCAAGCCCAAGGTGCAAGTGGAGTACAAGGGCGAGATGAAGACCTTTTTCCCAGAG 988979 Query 451250 GAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCT 451309 || || || ||||| || || || ||||| || | || || ||| | || Sbjct 988980 GAGATCAGCTCCATGGTGCTCACCAAGATGAAGGAGATTGCTGAGGCTTATCTGGGGAAG 989039 Query 451310 CCAGTTACTGA-TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGC 451368 || ||| || ||| || || || || |||||||| |||||||| | || || || || Sbjct 989040 A-AGGTACAGAATGCTGTTATCACAGTGCCCGCTTACTTCAATGACTCCCAGCGCCAGGC 989098 Query 451369 AACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTAC 451428 || |||||||| || || |||| | || || | || ||||| || || || || Sbjct 989099 CACCAAAGATGCTGGTACCATCACTGGCCTCAACGTGATGCGTATTATCAACGAGCCCAC 989158 Query 451429 AGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAA-----ACAGAAGaaaaaaaT 451483 |||||||||| | || || || || ||| || ||| | | | | ||| || ||| Sbjct 989159 AGCAGCTGCTATTGCCTACGG-CTTGGACAA-GAAAGGTACTCGGGCTGGAGAGAAGAAT 989216 Query 451484 ATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGAT 451543 | | | ||||| || || || || ||| |||| || | ||| | ||||| ||| Sbjct 989217 GTGCTCATCTTTGACTTGGGAGGGGGCACTTTTGATGTGTCCATCCTTACCATTGAGGAT 989276 Query 451544 GGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGAT 451603 || | ||||| || ||| | || ||| || || ||||| || || || || |||| Sbjct 989277 GGCATCTTTGAGGTGAAGTCGACAGCTGGGGACACCCATCTGGGTGGGGAGGACTTTGAC 989336 Query 451604 AA 451605 || Sbjct 989337 AA 989338 >seq40 Length=8742107 Score = 87.8 bits (96), Expect = 7e-12 Identities = 95/122 (78%), Gaps = 3/122 (2%) Strand=Plus/Minus Query 451306 TTCTCCAG-TTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGC 451364 |||| ||| ||||| |||| || ||||||| || || || ||||||||||| || || | Sbjct 7887852 TTCTGCAGGTTACTCATGCTGTTGTTACTGTGCCAGCCTACTTCAATGATGCTCAGCGTC 7887793 Query 451365 AAGCAACTAAAGATGCAGG-ACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 | || || |||||||| || ||| |||||||| || || || | || ||||||||||| Sbjct 7887792 AGGCTACAAAAGATGCTGGTACA-ATTGCTGGGTTGAACGTGATGCGCATTATTAATGAG 7887734 Query 451424 CC 451425 || Sbjct 7887733 CC 7887732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975409924912088