Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq5 131 1e-24 seq219 105 5e-17 >seq5 Length=36382235 Score = 131 bits (144), Expect = 1e-24 Identities = 922/1471 (63%), Gaps = 28/1471 (2%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 ||| | ||||| || |||||||| ||||| | || || || || || || |||||||| Sbjct 990103 GCACTGACATTCAGGATACCATTAGCATCTATGTCGAAAGTTACCTCGATCTGAGGGACT 990044 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | | || || ||||| || | | ||| | ||||| ||| || || || Sbjct 990043 CCACGGGGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAATTGTTGTCCTTT 989984 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT--AGTAACTACAGTTTGATTATCTGAAT 517436 || | | ||||| || | | |||| || ||| | | || || ||||| | Sbjct 989983 GTCATAGCCCTCTCACCTTCATACACCTGGACTAAGACACTGC--TCTGGTTGTCTGAGT 989926 Query 517437 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495 | || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 989925 AGGTGGTGAAGG-TCTGCGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGAGCA 989867 Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||||| ||||| || | || || || || || |||||||| | |||| Sbjct 989866 GTCATCACTCCACCAGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAACAGGAGC 989807 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || ||| | |||||| | | ||| | |||||||||||||| | ||| |||||| Sbjct 989806 AGATCTTGCACATTTTCAGACTTGTCACCCATGAGAATAGCTGCTTGCACAGCCGCACCA 989747 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-T 517674 || |||||||||||||| ||||| | | | || || | ||| |||||||| || | Sbjct 989746 TAAGCAACAGCTTCATCTGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 989687 Query 517675 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 || | || || | | |||||||||||||| || || || || | ||||| || || Sbjct 989686 TGCAGCAACTTCT-GGATCTTAGGAATACGAGTGGAGCCCCCCACGAGCACAATCTCCTG 989628 Query 517735 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794 | ||| |||||| || || | ||| | | || || || || || || | Sbjct 989627 GATCTGGCCTTTATCAAGCTTGGCATCACGCAGGGCCTTCTCCACCGGCTCCAGGGTACC 989568 Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA- 517852 | || | || | | || || ||||| || | ||| || || | || || Sbjct 989567 ACGGAAAAGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGT--GATGGAGGTGTAGAAG 989510 Query 517853 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 517912 ||||| || ||||| | || |||| ||||| | | ||| || ||||| || | | Sbjct 989509 TCAATGCCCTCGAAGAGGGAGTCAATCTCAATGCTGGCTTGCGTGGAAGAGCTCAGAGTA 989450 Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 517970 || || || | ||||| ||||| | || | | | || | ||| |||| | | Sbjct 989449 CGCTTTGCCCTCTCACAAGCTGTACGCAGCCGCCTCACTGC--TCGCTTATTGCCAGCGA 989392 Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATC 518028 || || | || | |||||| ||||| ||| | ||| | || | ||| || || Sbjct 989391 TGTCACGCTTGTGCTTACGCTTGAACTCTTCTACAAA--ATGGTTCACCATACGGTTGTC 989334 Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088 ||| || || || |||| | || | || | || | | || | || | ||||| Sbjct 989333 AAAGTCCTCCCCACCCAGATGGGTGTCCCCAGCTGTCGACTTCACCTCAAAGATGCCATC 989274 Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148 |||| | | | | |||||| || || || |||| ||||| || || ||||| Sbjct 989273 CTCAATGGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATT 989214 Query 518149 CATTTCTTTGTCTTG------GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 518202 | | ||| | | || || || | || || |||| |||||| || || || Sbjct 989213 CTTCTCTCCAGCCCGAGTACCTTTCTTGTCCAAGCCGTAGGCAATAGCAGCTGCTGTGGG 989154 Query 518203 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 || || ||||| | || || || || |||| || | || |||||||| ||||| || Sbjct 989153 CTCGTTGATAATACGCATCACGTTGAGGCCAGTGATGGTACCAGCATCTTTGGTGGCCTG 989094 Query 518263 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCAGTTACTTCTTTAC 518321 | || || || || || || || || || || ||||| ||| || || |||| || | Sbjct 989093 GCGCTGGGAGTCATTGAAGTAAGCGGGCACTGTGATAACAGCATTCTGTACCTTC-TTCC 989035 Query 518322 CAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG 518381 | | |||||| || | | ||||| || | | | ||| || || | |||| Sbjct 989034 CCAGATAAGCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCTG 988975 Query 518382 GGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACAT 518441 || || | ||| || | || |||| | | || || | | | Sbjct 988974 GGAAAAAGGTCTTCATCTCGCCCTTGTACTCCACTTGCACCTTGGGCTTGCCGCTCTCGT 988915 Query 518442 TAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTC 518501 | | || || ||||||| ||||| ||||| || || | |||||| | | | Sbjct 988914 TCACCACACGGAAGGGCCAGTGCTTCATGTCTGACTGCACCGTGGGGTCATCGTACTTGC 988855 Query 518502 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATT 518561 || || | || || ||||| || || || ||||| || || ||||| |||| | | Sbjct 988854 GGCCGATGAGACGCTTGGCATCGAAGATGGTGTTGGTGGGGTTCATTGCCACTTGGTTCT 988795 Query 518562 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 518621 |||| ||||| || || || | ||||| || || || | ||||| || || |||| Sbjct 988794 TGGCAGCATCCCCGATGAGGCGCTCTGTATCGGTGAAGGCCACATAGCTGGGTGTGGTGC 988735 Query 518622 GATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAAC 518681 | || || || || || || || || || ||||| |||| || | ||||| || || Sbjct 988734 GGTTCCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAGACACCCACGCAGG 988675 Query 518682 TAAAAGTTGTTCCTAAATCAATACCAATAGC 518712 | | || || || | ||| || || || || Sbjct 988674 AATACGTGGTGCCCAGATCGATGCCGATGGC 988644 >seq219 Length=695286 Score = 105 bits (116), Expect = 5e-17 Identities = 99/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| || || ||| | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 695171 TGTTGTTGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 695112 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 695111 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGAAGAGCTGGTCG 695052 Query 367113 TGATGG 367118 |||||| Sbjct 695051 TGATGG 695046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780217690539316