Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq5 131 1e-24
seq219 105 5e-17
>seq5
Length=36382235
Score = 131 bits (144), Expect = 1e-24
Identities = 922/1471 (63%), Gaps = 28/1471 (2%)
Strand=Plus/Minus
Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318
||| | ||||| || |||||||| ||||| | || || || || || || ||||||||
Sbjct 990103 GCACTGACATTCAGGATACCATTAGCATCTATGTCGAAAGTTACCTCGATCTGAGGGACT 990044
Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378
|| | | || || ||||| || | | ||| | ||||| ||| || || ||
Sbjct 990043 CCACGGGGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAATTGTTGTCCTTT 989984
Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT--AGTAACTACAGTTTGATTATCTGAAT 517436
|| | | ||||| || | | |||| || ||| | | || || ||||| |
Sbjct 989983 GTCATAGCCCTCTCACCTTCATACACCTGGACTAAGACACTGC--TCTGGTTGTCTGAGT 989926
Query 517437 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 517495
| || || || |||| ||| ||| ||||| || ||||| | | || | |
Sbjct 989925 AGGTGGTGAAGG-TCTGCGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGAGCA 989867
Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555
||||| | ||||| ||||| || | || || || || || |||||||| | ||||
Sbjct 989866 GTCATCACTCCACCAGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAACAGGAGC 989807
Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615
| || ||| | |||||| | | ||| | |||||||||||||| | ||| ||||||
Sbjct 989806 AGATCTTGCACATTTTCAGACTTGTCACCCATGAGAATAGCTGCTTGCACAGCCGCACCA 989747
Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-T 517674
|| |||||||||||||| ||||| | | | || || | ||| |||||||| || |
Sbjct 989746 TAAGCAACAGCTTCATCTGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 989687
Query 517675 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734
|| | || || | | |||||||||||||| || || || || | ||||| || ||
Sbjct 989686 TGCAGCAACTTCT-GGATCTTAGGAATACGAGTGGAGCCCCCCACGAGCACAATCTCCTG 989628
Query 517735 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794
| ||| |||||| || || | ||| | | || || || || || || |
Sbjct 989627 GATCTGGCCTTTATCAAGCTTGGCATCACGCAGGGCCTTCTCCACCGGCTCCAGGGTACC 989568
Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA- 517852
| || | || | | || || ||||| || | ||| || || | || ||
Sbjct 989567 ACGGAAAAGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGT--GATGGAGGTGTAGAAG 989510
Query 517853 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 517912
||||| || ||||| | || |||| ||||| | | ||| || ||||| || | |
Sbjct 989509 TCAATGCCCTCGAAGAGGGAGTCAATCTCAATGCTGGCTTGCGTGGAAGAGCTCAGAGTA 989450
Query 517913 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 517970
|| || || | ||||| ||||| | || | | | || | ||| |||| | |
Sbjct 989449 CGCTTTGCCCTCTCACAAGCTGTACGCAGCCGCCTCACTGC--TCGCTTATTGCCAGCGA 989392
Query 517971 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATC 518028
|| || | || | |||||| ||||| ||| | ||| | || | ||| || ||
Sbjct 989391 TGTCACGCTTGTGCTTACGCTTGAACTCTTCTACAAA--ATGGTTCACCATACGGTTGTC 989334
Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088
||| || || || |||| | || | || | || | | || | || | |||||
Sbjct 989333 AAAGTCCTCCCCACCCAGATGGGTGTCCCCAGCTGTCGACTTCACCTCAAAGATGCCATC 989274
Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148
|||| | | | | |||||| || || || |||| ||||| || || |||||
Sbjct 989273 CTCAATGGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATT 989214
Query 518149 CATTTCTTTGTCTTG------GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 518202
| | ||| | | || || || | || || |||| |||||| || || ||
Sbjct 989213 CTTCTCTCCAGCCCGAGTACCTTTCTTGTCCAAGCCGTAGGCAATAGCAGCTGCTGTGGG 989154
Query 518203 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262
|| || ||||| | || || || || |||| || | || |||||||| ||||| ||
Sbjct 989153 CTCGTTGATAATACGCATCACGTTGAGGCCAGTGATGGTACCAGCATCTTTGGTGGCCTG 989094
Query 518263 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCAGTTACTTCTTTAC 518321
| || || || || || || || || || || ||||| ||| || || |||| || |
Sbjct 989093 GCGCTGGGAGTCATTGAAGTAAGCGGGCACTGTGATAACAGCATTCTGTACCTTC-TTCC 989035
Query 518322 CAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG 518381
| | |||||| || | | ||||| || | | | ||| || || | ||||
Sbjct 989034 CCAGATAAGCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCTG 988975
Query 518382 GGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACAT 518441
|| || | ||| || | || |||| | | || || | | |
Sbjct 988974 GGAAAAAGGTCTTCATCTCGCCCTTGTACTCCACTTGCACCTTGGGCTTGCCGCTCTCGT 988915
Query 518442 TAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTC 518501
| | || || ||||||| ||||| ||||| || || | |||||| | | |
Sbjct 988914 TCACCACACGGAAGGGCCAGTGCTTCATGTCTGACTGCACCGTGGGGTCATCGTACTTGC 988855
Query 518502 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATT 518561
|| || | || || ||||| || || || ||||| || || ||||| |||| | |
Sbjct 988854 GGCCGATGAGACGCTTGGCATCGAAGATGGTGTTGGTGGGGTTCATTGCCACTTGGTTCT 988795
Query 518562 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 518621
|||| ||||| || || || | ||||| || || || | ||||| || || ||||
Sbjct 988794 TGGCAGCATCCCCGATGAGGCGCTCTGTATCGGTGAAGGCCACATAGCTGGGTGTGGTGC 988735
Query 518622 GATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAAC 518681
| || || || || || || || || || ||||| |||| || | ||||| || ||
Sbjct 988734 GGTTCCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAGACACCCACGCAGG 988675
Query 518682 TAAAAGTTGTTCCTAAATCAATACCAATAGC 518712
| | || || || | ||| || || || ||
Sbjct 988674 AATACGTGGTGCCCAGATCGATGCCGATGGC 988644
>seq219
Length=695286
Score = 105 bits (116), Expect = 5e-17
Identities = 99/126 (79%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052
||| || || ||| | |||||||| ||||| || |||||| | ||| | | | |||||
Sbjct 695171 TGTTGTTGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 695112
Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112
||||||||| || || ||| | || ||| ||||||||||||||||| ||||| |||||
Sbjct 695111 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGAAGAGCTGGTCG 695052
Query 367113 TGATGG 367118
||||||
Sbjct 695051 TGATGG 695046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780217690539316
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |