Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq5 306 5e-78 seq42 185 1e-41 >seq5 Length=36382235 Score = 306 bits (338), Expect = 5e-78 Identities = 1037/1599 (65%), Gaps = 36/1599 (2%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| || || || || ||||| ||||| ||||| || ||||| | Sbjct 990224 TTCATCCTCTGCTTTGTATTTCTCTGCCTCTTGCACCATACGGTCAATATCATCTTT-GC 990166 Query 6628 TAAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 ||| | ||||| ||||| || || || ||||| | ||| || | ||| || Sbjct 990165 TAAGGCGACCCTTGTCATTGGTGATGGTTATCTTGTTCTCTTTCCCTGTACTCTTGTCCA 990106 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 ||||||| ||||||| |||||||| ||||| | ||||| |||| | || || || Sbjct 990105 CAGCACTGACATTCAGGATACCATTAGCATCTATGTCGAAAGTTACCTCGATCTGAGGGA 990046 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 || | ||||| | || || ||||||| ||||| | || || ||| |||| ||| Sbjct 990045 CTCCACGGGGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAATTGTTGTCCT 989986 Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTG 6864 | | | | | ||||||||||| || | | | | ||| || || || ||| Sbjct 989985 TTGTCATAGCCCTCTCACCTTCATACACCTGGACTAAGACACTGC--TCTGGTTGTCTGA 989928 Query 6865 TGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGG 6924 || | |||| | || || || | ||||| || || || | | || | | Sbjct 989927 GTAGGTGGTGAAGGTCTGCGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGAGC 989868 Query 6925 GGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAA 6984 ||||| | ||||| || |||| || || ||||| || || || ||||| || | Sbjct 989867 AGTCATCACTCCACCAGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAACAGGAG 989808 Query 6985 CAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCC 7044 ||| ||||| ||| ||| | |||||| | | || || ||||| || | ||| || Sbjct 989807 CAGATCTTGCACATTTTCAGACTTGTCACCCATGAGAATAGCTGCTTGCACAGCCGCACC 989748 Query 7045 GTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATC 7104 || || || || ||||| || || || | || || || ||||| || || || | || Sbjct 989747 ATAAGCAACAGCTTCATCTGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTC 989688 Query 7105 CGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATT 7164 | | || | || || || || || || || || || || || | || || || | Sbjct 989687 CTGCAGCAACTTCTGGATCTTAGGAATACGAGTGGAGCCCCCCACGAGCACAATCTCCTG 989628 Query 7165 CACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACA 7221 | | |||||| | ||| | || || || | || || || || |||| ||| Sbjct 989627 GATCTGGCCTTTATCAAGCTTGGCATCACGCAGGGCCTTCTCCACCGGCTCCAGGGTAC- 989569 Query 7222 TTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAA 7281 |||||| | || | || ||||| || || ||||| || ||||| || ||||| Sbjct 989568 --CACGGAAAAGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGTGATGGAGGTGTAGAA 989511 Query 7282 ATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA---TAA 7338 |||| ||| ||| | | || ||||| |||||| | | ||| ||| ||||| | Sbjct 989510 GTCAATGCCCTCGAAGAGGGAGTCAATCTCAATGCTGGCTTG---CGTGGAAGAGCTCAG 989454 Query 7339 CGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGA 7398 || |||||||| | |||||| || || || | || | | || ||| || || | Sbjct 989453 AGTACGCTTTGCCCTCTCACAAGCTGTACGCAGCCGCCTCACTGCTCGCTTATTGCCAGC 989394 Query 7399 AATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATC 7458 || || ||| || ||||| || |||||||| || || | | | || Sbjct 989393 GATGTCACGCTTGTGCTTACGCTTGAACTCTTCTACAAAATGGTTCACCATACGGTTGTC 989334 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 || || || ||||||| || || ||||| || |||| || || |||||||| || | Sbjct 989333 AAAGTCCTCCCCACCCAGATGGGTGTCCCCAGCTGTCGACTTCACCTCAAAGATGCCATC 989274 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 |||||| | | | || |||||||| || || || |||| |||||| ||||| || || Sbjct 989273 CTCAATGGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATT 989214 Query 7579 CGTATCGTC-GTCTTTG-----TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGG 7632 | | || | | | | ||||| || | ||||| || ||||| || || || || Sbjct 989213 CTTCTCTCCAGCCCGAGTACCTTTCTTGTCCAAGCCGTAGGCAATAGCAGCTGCTGTGGG 989154 Query 7633 TTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTG 7692 || || |||||||| | ||| ||||||| || || | |||||||| || || || Sbjct 989153 CTCGTTGATAATACGCATCACGTTGAGGCCAGTGATGGTACCAGCATCTTTGGTGGCCTG 989094 Query 7693 TCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACC 7752 || || || || || ||||| || || || || | || || | | || ||||| || Sbjct 989093 GCGCTGGGAGTCATTGAAGTAAGCGGGCACTGTGATAACAGCATTCTGTACCTTCTTCCC 989034 Query 7753 GAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGC 7812 ||||| | || || || || ||||| ||||| || ||||| || ||||| || | Sbjct 989033 CAGATAAGCCTCAGCAATCTCCTTCATCTTGGTGAGCACCATGGAGCTGATCTCCTCTG- 988975 Query 7813 CGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCAC 7871 | ||| || ||| | || || || | || |||| | | |||| || || || | Sbjct 988974 GGAAAAAGGTCTTCATCTCGCCCTTGTACTCCACTTGCACCTTGGGCTT----GCCGCTC 988919 Query 7872 -CGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAAC 7930 || | || | | ||| | ||||| || || ||| |||| || Sbjct 988918 TCGTTCACCACACGGAAGGGCCAGTGCTTCATGTCTGACTGCACCGTGGGGTCATCGTAC 988859 Query 7931 TTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGG 7990 || | ||||| |||||||| ||||| || | ||||| |||||||||| || |||| Sbjct 988858 TTGCGGCCGATGAGACGCTTGGCATCGAAGATGGTGTTGGTGGGGTTCATTGCCACTTGG 988799 Query 7991 TTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG 8050 ||||| || || |||||||| || || || || || || || || || || | |||| Sbjct 988798 TTCTTGGCAGCATCCCCGATGAGGCGCTCTGTA---TCGGTGAAGGCCACATA-GCTGGG 988743 Query 8051 -GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCC 8109 || || || ||||| |||||||| || || || || || | | | || |||| || Sbjct 988742 TGTGGTGCGGTTCCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAGACACC 988683 Query 8110 GACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||||| |||||||| || || | ||| || ||||| || Sbjct 988682 CACGCAGGAATACGTGGTGCCCAGATCGATGCCGATGGC 988644 >seq42 Length=6198043 Score = 185 bits (204), Expect = 1e-41 Identities = 365/540 (68%), Gaps = 0/540 (0%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || || || | || |||| ||||| || || || Sbjct 3034326 GCACCATAAGCCACGGCTTCATCAGGATTGATGCTCTTGTTCAACTCTTTGCCATTGAAG 3034267 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 | || | || || ||||| || ||||| || || || || || |||| ||||| Sbjct 3034266 AAGTCTTGAAGCAGTTTCTGAATCTTTGGGATGCGAGTAGAGCCCCCAACCAGCACGATG 3034207 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATA 7219 |||| | | || || || | ||| | || || || | || || ||||| |||| Sbjct 3034206 TCATGGATCTGTGACTTGTCCAGCTTGGCATCCCGCAGGGCCTTCTCCACAGGATCCAGG 3034147 Query 7220 CATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAG 7279 |||||||| ||| | ||| ||||| ||||| || | ||| |||||||| ||| Sbjct 3034146 GTGCCACGGAACAGGTCAGCATTCAGCTCCTCGAAACGAGCTCTGGTGATGGATGTGTAG 3034087 Query 7280 AAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAAC 7339 || |||| || || || | ||||| |||||||| | | ||||| | || || | Sbjct 3034086 AAGTCAATACCCTCATAGAGAGAATCGATTTCAATACTGGCTTGTGTGCTTGATGACAGG 3034027 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || |||||||| || |||||||| || || | ||||||| || | | ||| | Sbjct 3034026 GTACGCTTTGCACGTTCACACGCAGTACGAAGGCGACGAACTGCTCTCTTGTTCTCACTG 3033967 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || |||||||| || || || || || || || |||||| | | | || Sbjct 3033966 ATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATACGGTTGTCA 3033907 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 |||||||| |||||||| || || || || || || | ||| || |||||||| || || Sbjct 3033906 AAATCTTCTCCACCCAAATGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGCCATCT 3033847 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 ||||| | | | || |||||||| || ||||| || ||||||||||| || |||||| Sbjct 3033846 TCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAAATAAGAACGTTC 3033787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635036053396240