Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq114 140 7e-28
seq89 123 6e-23
>seq114
Length=3819349
Score = 140 bits (154), Expect = 7e-28
Identities = 166/224 (74%), Gaps = 6/224 (3%)
Strand=Plus/Plus
Query 194920 CTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTT 194979
||||| | || || || || || |||||||| || || || ||||| || | || ||
Sbjct 3315995 CTGAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTG 3316054
Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039
| ||| ||||| |||||||| || |||||||| || | || || || || |||||||||
Sbjct 3316055 CGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCT 3316114
Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCA 195096
||||||||||| || || ||| || || ||||||||||| ||| ||| || |||
Sbjct 3316115 TCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTGTC---ACTGGGTTCAACCTCA 3316171
Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
||||| | ||||| || ||||| ||||| || || | |||||
Sbjct 3316172 AGGGTGATGGTCTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 3316215
Score = 140 bits (154), Expect = 7e-28
Identities = 159/212 (75%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| || || || |||||||| || || || ||||| || | || || | |||||||||
Sbjct 3316235 ACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 3316294
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || | || || || |||||||||||||||||||||||
Sbjct 3316295 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGG 3316354
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| ||||||||||||||||| ||| ||| || |||||||| | |||
Sbjct 3316355 ATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGTTCAACCTCAAGGGTGATGGTC 3316411
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || |||| || || || || | |||||
Sbjct 3316412 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3316443
>seq89
Length=7284382
Score = 123 bits (136), Expect = 6e-23
Identities = 163/225 (72%), Gaps = 6/225 (3%)
Strand=Plus/Plus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
||| || | || ||||| || ||||||||||| || || || ||||| || | || ||
Sbjct 2822430 TCTCAGGCGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT 2822489
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
| ||||||||| |||||||| || || ||||| || | || || || || ||||||||
Sbjct 2822490 GCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCC 2822549
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTC 195095
|| ||||| || || || |||||| ||||| |||||||| ||| |||||| ||
Sbjct 2822550 CTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGTTCCACCTC 2822606
Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| ||| | || || || |||| || || ||||| | |||||
Sbjct 2822607 CAAGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2822651
Score = 122 bits (134), Expect = 2e-22
Identities = 155/212 (73%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| || | ||||| | ||| |||||
Sbjct 2821987 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCTTCC 2822046
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || | || || || || |||||||| || ||||| ||
Sbjct 2822047 AGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGG 2822106
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTC 195108
|| || ||| || |||||||||||||| ||| |||||| || | ||| | |||
Sbjct 2822107 ATCTTGGCCTTCACATTCTCAATGGTGTC---ACTGGGTTCCACCTCCAAGGTTATGGTC 2822163
Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || |||| || || ||||| | |||||
Sbjct 2822164 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2822195
Score = 116 bits (128), Expect = 8e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || |||||||| || || || ||||| || | ||||| | || |||||
Sbjct 2822215 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCGTCTTCC 2822274
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || |||||||| || | || || || || |||||||| || ||||| ||
Sbjct 2822275 AGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGG 2822334
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||| || |||||||||||||| | || || || || || | |||||
Sbjct 2822335 ATCTTGGCCTTCACATTCTCAATGGTGTCACTGGTCTCAACCTCCAGAGTGATGGTCTTA 2822394
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| || || || || | |||||
Sbjct 2822395 CCCGTCAAGGTCTTCACAAAGATCTGCAT 2822423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109308373170662
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |