Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq42 116 3e-20 seq5 114 1e-19 >seq42 Length=6198043 Score = 116 bits (128), Expect = 3e-20 Identities = 109/139 (78%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| ||| | |||||||| || |||||||||||||| || || || || || ||||||| Sbjct 3033517 ATGCTGTAGTCACTGTACCGGCCTATTTTAATGACTCCCAGCGCCAGGCCACAAAAGATG 3033576 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| ||||| || || ||||| || || |||||||| || || || |||||||| Sbjct 3033577 CTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAACGAGCCAACAGCTGCTGCTA 3033636 Query 550518 TTGCATATGGACTTGATAA 550536 | || ||||| || ||||| Sbjct 3033637 TAGCCTATGGTCTGGATAA 3033655 Score = 95.1 bits (104), Expect = 1e-13 Identities = 138/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | ||||| ||| | |||||||| ||| ||||||||||| | ||| |||| || Sbjct 3032549 AGCTGTTGGTATCGATCTCGGAACCACCTATTCCTGTGTTGGTGTATTCCAACATGGGAA 3032608 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| ||||||||||| || |||||||| || || ||| || || |||| || Sbjct 3032609 GGTGGAAATCATTGCCAATGACCAGGGTAACAGGACCACACCAAGCTACGTCGCTTTTAC 3032668 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACC 550168 || || || || |||| ||||| || || | |||| || || ||||| ||| Sbjct 3032669 AGATACAGAGAGGTTGATTGGCGATGCTGCCAAGAACCAAGTTGCAATG--AATCCCACC 3032726 Query 550169 AATACTATTTTTG 550181 || || | |||| Sbjct 3032727 AACACAGTCTTTG 3032739 >seq5 Length=36382235 Score = 114 bits (126), Expect = 1e-19 Identities = 330/505 (65%), Gaps = 2/505 (0%) Strand=Plus/Plus Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146 ||| | ||| |||||||| | | | || || |||||||| || || || || || | Sbjct 989601 GATGCCAAGCTTGATAAAGGCCAGATCCAGGAGATTGTGCTCGTGGGGGGCTCCACTCGT 989660 Query 552147 ATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAG 552205 |||||||| || | | || | || ||| || |||||| ||| | | || | || Sbjct 989661 ATTCCTAAGATCCAGAAGTTGCTGCAGGACTTCTT-CAATGGCAAAGAGCTCAACAAGAG 989719 Query 552206 TGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGG 552265 | ||||||||||| |||||||| |||||||| || | |||||||||||||| || Sbjct 989720 CATCAATCCAGATGAAGCTGTTGCTTATGGTGCGGCTGTGCAAGCAGCTATTCTCATGGG 989779 Query 552266 ACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGG 552325 | | |||||| | ||| || | | || | ||||| || || || || || || Sbjct 989780 TGACAAGTCTGAAAATGTGCAAGATCTGCTCCTGTTGGATGTCACCCCCCTGTCCCTGGG 989839 Query 552326 TTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTG 552385 | || |||| ||| || | |||||| ||| ||| | | || || || ||||| Sbjct 989840 CATCGAGACAGCTGGTGGAGTGATGACTGCTCTCATCAAGCGTAACACCACCATTCCCAC 989899 Query 552386 TAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAAT 552445 ||| || | | || | || || ||||| || || | ||| | | || | Sbjct 989900 CAAACAAACGCAGACCTTCACCACCTACTCAGACAACCAGAGCAGTGTCTTAGTCCAGGT 989959 Query 552446 TTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGA 552505 | |||||| || || | || || || || ||| || || | ||| | || Sbjct 989960 GTATGAAGGTGAGAGGGCTATGACAAAGGACAACAATTTGCTGGGCAAGTTTGACCTAAC 990019 Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565 || || || || || || |||||||| || || || || || |||||||| || ||||| Sbjct 990020 GGGCATCCCCCCAGCACCCCGTGGAGTCCCTCAGATCGAGGTAACTTTCGACATAGATGC 990079 Query 552566 CAATGGAATTTTGAATGTGACTGCT 552590 ||||| || ||||||| | |||| Sbjct 990080 TAATGGTATCCTGAATGTCAGTGCT 990104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028651549361140