Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq42 116 3e-20
seq5 114 1e-19
>seq42
Length=6198043
Score = 116 bits (128), Expect = 3e-20
Identities = 109/139 (78%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| ||| | |||||||| || |||||||||||||| || || || || || |||||||
Sbjct 3033517 ATGCTGTAGTCACTGTACCGGCCTATTTTAATGACTCCCAGCGCCAGGCCACAAAAGATG 3033576
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
||||| ||||| || || ||||| || || |||||||| || || || ||||||||
Sbjct 3033577 CTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAACGAGCCAACAGCTGCTGCTA 3033636
Query 550518 TTGCATATGGACTTGATAA 550536
| || ||||| || |||||
Sbjct 3033637 TAGCCTATGGTCTGGATAA 3033655
Score = 95.1 bits (104), Expect = 1e-13
Identities = 138/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050
|||| | ||||| ||| | |||||||| ||| ||||||||||| | ||| |||| ||
Sbjct 3032549 AGCTGTTGGTATCGATCTCGGAACCACCTATTCCTGTGTTGGTGTATTCCAACATGGGAA 3032608
Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110
|| ||||| ||||||||||| || |||||||| || || ||| || || |||| ||
Sbjct 3032609 GGTGGAAATCATTGCCAATGACCAGGGTAACAGGACCACACCAAGCTACGTCGCTTTTAC 3032668
Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACC 550168
|| || || || |||| ||||| || || | |||| || || ||||| |||
Sbjct 3032669 AGATACAGAGAGGTTGATTGGCGATGCTGCCAAGAACCAAGTTGCAATG--AATCCCACC 3032726
Query 550169 AATACTATTTTTG 550181
|| || | ||||
Sbjct 3032727 AACACAGTCTTTG 3032739
>seq5
Length=36382235
Score = 114 bits (126), Expect = 1e-19
Identities = 330/505 (65%), Gaps = 2/505 (0%)
Strand=Plus/Plus
Query 552087 GATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGA 552146
||| | ||| |||||||| | | | || || |||||||| || || || || || |
Sbjct 989601 GATGCCAAGCTTGATAAAGGCCAGATCCAGGAGATTGTGCTCGTGGGGGGCTCCACTCGT 989660
Query 552147 ATTCCTAAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAG 552205
|||||||| || | | || | || ||| || |||||| ||| | | || | ||
Sbjct 989661 ATTCCTAAGATCCAGAAGTTGCTGCAGGACTTCTT-CAATGGCAAAGAGCTCAACAAGAG 989719
Query 552206 TGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGG 552265
| ||||||||||| |||||||| |||||||| || | |||||||||||||| ||
Sbjct 989720 CATCAATCCAGATGAAGCTGTTGCTTATGGTGCGGCTGTGCAAGCAGCTATTCTCATGGG 989779
Query 552266 ACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGG 552325
| | |||||| | ||| || | | || | ||||| || || || || || ||
Sbjct 989780 TGACAAGTCTGAAAATGTGCAAGATCTGCTCCTGTTGGATGTCACCCCCCTGTCCCTGGG 989839
Query 552326 TTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTG 552385
| || |||| ||| || | |||||| ||| ||| | | || || || |||||
Sbjct 989840 CATCGAGACAGCTGGTGGAGTGATGACTGCTCTCATCAAGCGTAACACCACCATTCCCAC 989899
Query 552386 TAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAAT 552445
||| || | | || | || || ||||| || || | ||| | | || |
Sbjct 989900 CAAACAAACGCAGACCTTCACCACCTACTCAGACAACCAGAGCAGTGTCTTAGTCCAGGT 989959
Query 552446 TTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGA 552505
| |||||| || || | || || || || ||| || || | ||| | ||
Sbjct 989960 GTATGAAGGTGAGAGGGCTATGACAAAGGACAACAATTTGCTGGGCAAGTTTGACCTAAC 990019
Query 552506 AGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGC 552565
|| || || || || || |||||||| || || || || || |||||||| || |||||
Sbjct 990020 GGGCATCCCCCCAGCACCCCGTGGAGTCCCTCAGATCGAGGTAACTTTCGACATAGATGC 990079
Query 552566 CAATGGAATTTTGAATGTGACTGCT 552590
||||| || ||||||| | ||||
Sbjct 990080 TAATGGTATCCTGAATGTCAGTGCT 990104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4028651549361140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |