Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq2 140 4e-28
seq1 107 2e-18
>seq2
Length=38276455
Score = 140 bits (154), Expect = 4e-28
Identities = 104/122 (85%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
||||||||||| || | ||||||||||| || | ||| |||||||| |||||||| ||
Sbjct 2050877 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 2050936
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| |||||| |||| ||||||||| ||||||||||| || ||||| |||||||||||||||
Sbjct 2050937 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 2050996
Query 37320 AC 37321
||
Sbjct 2050997 AC 2050998
>seq1
Length=54145758
Score = 107 bits (118), Expect = 2e-18
Identities = 97/122 (80%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
|||||||| || || | |||||| ||||| || ||||| ||||||| || || || ||
Sbjct 8045431 TCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTAGGCCCCTCTTCTTC 8045372
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| ||||||||| || ||||| || || |||||||| || ||||||||||| ||||| ||
Sbjct 8045371 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 8045312
Query 37320 AC 37321
||
Sbjct 8045311 AC 8045310
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592226575343440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |