Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2 140 4e-28 seq1 107 2e-18 >seq2 Length=38276455 Score = 140 bits (154), Expect = 4e-28 Identities = 104/122 (85%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||||||| || | ||||||||||| || | ||| |||||||| |||||||| || Sbjct 2050877 TCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTC 2050936 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | |||||| |||| ||||||||| ||||||||||| || ||||| ||||||||||||||| Sbjct 2050937 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCT 2050996 Query 37320 AC 37321 || Sbjct 2050997 AC 2050998 >seq1 Length=54145758 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || ||||| ||||||| || || || || Sbjct 8045431 TCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTAGGCCCCTCTTCTTC 8045372 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||||||||| || ||||| || || |||||||| || ||||||||||| ||||| || Sbjct 8045371 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 8045312 Query 37320 AC 37321 || Sbjct 8045311 AC 8045310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592226575343440