Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq144 127 4e-24 seq7019 125 1e-23 seq84 93.3 8e-14 >seq144 Length=989387 Score = 127 bits (140), Expect = 4e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 || |||| ||| ||||| ||||||||||| || || || | | ||||| || |||| Sbjct 30754 AGCACCTTCTGCTTGAGCTGGGCCACCTGCTCGCGGAGCAGGCTGGCGGTGGAGGCCAGT 30695 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | |||||| |||||| ||||||||||| || | |||||| |||||| Sbjct 30694 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGGCGGGAGATGCGCTCCAGT 30635 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 || | | |||||| |||| ||| || | |||||||| || | || || ||||| ||| Sbjct 30634 TTCCTCTTGCGGCACTTGGAGGCGGCGATGCGGTTCCTCAGCCGTTTCCGCTCCGCTTTG 30575 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| ||||| ||||| ||||| || ||| Sbjct 30574 ATGCGCTCCTGCGTGTCCATATCGATGGGGGAC 30542 >seq7019 Length=13215502 Score = 125 bits (138), Expect = 1e-23 Identities = 111/139 (80%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||| ||| ||||||| |||||||||||||| |||||||| ||||| || | ||||||||| Sbjct 7841652 CTTCAGCGCCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCTCCGGCGGCA 7841593 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| || | ||||||||| || | ||| || |||||||| | ||| |||||| Sbjct 7841592 CTTGGAGGCCGCGATGCGGTTCCGAAGCCGCTTGCGCTCCGCCTTCAGGCGCTCCTGGCT 7841533 Query 241609 CTCCATGTCGATCGGAGAC 241627 |||| ||| | ||| ||| Sbjct 7841532 CTCCGCGTCCAGCGGCGAC 7841514 >seq84 Length=273125 Score = 93.3 bits (102), Expect = 8e-14 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872 ||||||| |||||| || ||||| | ||| || || ||| ||||| |||| | | | Sbjct 178194 ACTCTCTTCATGAAGAGATCCGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTGC 178253 Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932 || || |||| ||| || | || ||||| || ||||||||| |||||||||| Sbjct 178254 TCTTCTTTCCCAGTGTTCTTCTTTAAGTCAAGAAACTCGAAGATGTCCAGGTGCCACGGC 178313 Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963 |||| |||||||||||| || || || |||| Sbjct 178314 TCCAAGTAGATGGCAAAAGCCCCAGGTCTCT 178344 Score = 91.5 bits (100), Expect = 3e-13 Identities = 119/162 (73%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||||| || || |||||||||||||||||| |||||| |||| |||||| | | Sbjct 176918 GTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTCCCCAAGTTCTGCT-G 176976 Query 213588 TTTGACTTTGC-GTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| ||| | |||| ||| || ||||| |||||||| || | || |||||| ||| Sbjct 176977 ATTGCTTTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGTGCCAGTCTCTGTCTG 177036 Query 213647 GGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCAC 213688 ||| | | || | |||||| | | |||||| ||||| Sbjct 177037 CGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCAC 177078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931390904266240