Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq144 127 4e-24
seq7019 125 1e-23
seq84 93.3 8e-14
>seq144
Length=989387
Score = 127 bits (140), Expect = 4e-24
Identities = 156/213 (73%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474
|| |||| ||| ||||| ||||||||||| || || || | | ||||| || ||||
Sbjct 30754 AGCACCTTCTGCTTGAGCTGGGCCACCTGCTCGCGGAGCAGGCTGGCGGTGGAGGCCAGT 30695
Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534
| | ||| | |||||| |||||| ||||||||||| || | |||||| ||||||
Sbjct 30694 TCCGTGTTCTGGCTCTTGAGGCTCTTCACCTTCTCCTCCAGGCGGGAGATGCGCTCCAGT 30635
Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594
|| | | |||||| |||| ||| || | |||||||| || | || || ||||| |||
Sbjct 30634 TTCCTCTTGCGGCACTTGGAGGCGGCGATGCGGTTCCTCAGCCGTTTCCGCTCCGCTTTG 30575
Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627
||||| ||||| ||||| ||||| || |||
Sbjct 30574 ATGCGCTCCTGCGTGTCCATATCGATGGGGGAC 30542
>seq7019
Length=13215502
Score = 125 bits (138), Expect = 1e-23
Identities = 111/139 (80%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548
||| ||| ||||||| |||||||||||||| |||||||| ||||| || | |||||||||
Sbjct 7841652 CTTCAGCGCCTTCACCTTCTCCTCCAGCCGGGCGATGCGCTCCAGCTTCCTCCGGCGGCA 7841593
Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608
|||| ||| || | ||||||||| || | ||| || |||||||| | ||| ||||||
Sbjct 7841592 CTTGGAGGCCGCGATGCGGTTCCGAAGCCGCTTGCGCTCCGCCTTCAGGCGCTCCTGGCT 7841533
Query 241609 CTCCATGTCGATCGGAGAC 241627
|||| ||| | ||| |||
Sbjct 7841532 CTCCGCGTCCAGCGGCGAC 7841514
>seq84
Length=273125
Score = 93.3 bits (102), Expect = 8e-14
Identities = 111/151 (74%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 213813 ACTCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTC 213872
||||||| |||||| || ||||| | ||| || || ||| ||||| |||| | | |
Sbjct 178194 ACTCTCTTCATGAAGAGATCCGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCACGCTGC 178253
Query 213873 TCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGC 213932
|| || |||| ||| || | || ||||| || ||||||||| ||||||||||
Sbjct 178254 TCTTCTTTCCCAGTGTTCTTCTTTAAGTCAAGAAACTCGAAGATGTCCAGGTGCCACGGC 178313
Query 213933 TCCATGTAGATGGCAAAGGCGCCCGGCCTCT 213963
|||| |||||||||||| || || || ||||
Sbjct 178314 TCCAAGTAGATGGCAAAAGCCCCAGGTCTCT 178344
Score = 91.5 bits (100), Expect = 3e-13
Identities = 119/162 (73%), Gaps = 2/162 (1%)
Strand=Plus/Plus
Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587
|| ||||||| || || |||||||||||||||||| |||||| |||| |||||| | |
Sbjct 176918 GTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTCCCCAAGTTCTGCT-G 176976
Query 213588 TTTGACTTTGC-GTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646
||| ||| | |||| ||| || ||||| |||||||| || | || |||||| |||
Sbjct 176977 ATTGCTTTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGTGCCAGTCTCTGTCTG 177036
Query 213647 GGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCAC 213688
||| | | || | |||||| | | |||||| |||||
Sbjct 177037 CGACTCGATGATGGCGTACCAGAGCTGCTGGGCCTTCACCAC 177078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931390904266240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |