Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq84 89.7 1e-12 seq1 84.2 4e-11 >seq84 Length=273125 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 222019 CTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATC 222078 || |||| || || |||| ||||||||| ||||| ||||| || || || || || Sbjct 178181 CTGGTTGGTTTCCACTCTCTTCATGAAGAGATCCGGAATCCAGAGGGCAAAGAAAAGGTC 178240 Query 222079 TCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTC 222138 ||||| |||||||| || || |||| ||| | | || | |||||| || ||||| Sbjct 178241 TCTGGCACGCTGCTCTTCTTTCCCAGTGTTCTTCTTTAAGTCAAGAAACTCGAAGATGTC 178300 Query 222139 AGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCT 222182 |||||||||||||| |||| ||| | ||| || |||| || Sbjct 178301 CAGGTGCCACGGCTCCAAGTAGATGGCAAAAGCCCCAGGTCTCT 178344 Score = 84.2 bits (92), Expect = 4e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 221731 CACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGT 221790 ||||||||| ||| ||||||||| | || ||||| || ||||||||||| |||||||| Sbjct 176902 CACCTCGTCTTTGCTGGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGT 176961 Query 221791 CCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACC 221850 ||||| || | ||||| || | ||| || ||| ||||| ||||| | || Sbjct 176962 CCCCAAGTTCTGCTGATTGCTTTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGT 177021 Query 221851 GCCAGTCTC 221859 ||||||||| Sbjct 177022 GCCAGTCTC 177030 >seq1 Length=54145758 Score = 84.2 bits (92), Expect = 4e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||| || |||| ||||||||||| || || |||||||| || ||||| ||||| Sbjct 8045298 GGTGAGAGGGTGGTTGCCTTTGCTGCAGTTGAAGGCATCTTCTTTTCGGGTTCATTTGCT 8045357 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || || || ||||| ||| ||| ||| ||||| || || |||||||| || || Sbjct 8045358 GCTATATTTTGGCTGAAGAAGAGGGGCCTAATGCCTGGATTGACTTTTTCCAATGAACTT 8045417 Query 25993 ATCAGCAGGGACGAGG 26008 || ||||| || |||| Sbjct 8045418 ATTAGCAGAGATGAGG 8045433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928703313715840