Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq42 120 2e-21 seq219 95.1 8e-14 seq49 86.0 4e-11 >seq42 Length=6198043 Score = 120 bits (132), Expect = 2e-21 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 |||||| |||| ||| | ||||| || || ||||||||||| || || || || || || Sbjct 3033510 GTAACTAATGCTGTAGTCACTGTACCGGCCTATTTTAATGACTCCCAGCGCCAGGCCACA 3033569 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| |||| |||||||| || ||||| | || ||||| || || |||||||| Sbjct 3033570 AAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAACGAGCCAACAGCT 3033629 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || | || |||||||| |||||||| Sbjct 3033630 GCTGCTATAGCCTATGGTCTGGATAAGAA 3033658 Score = 95.1 bits (104), Expect = 8e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || ||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 3035212 GGCATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 3035271 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || ||||| ||||| ||||| Sbjct 3035272 AATGGCATCCTGAATGTCTCTGCTGTGGATAA 3035303 Score = 93.3 bits (102), Expect = 3e-13 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||| ||| | ||||| || || ||||| | ||| | ||| |||| || || | Sbjct 3032554 TTGGTATCGATCTCGGAACCACCTATTCCTGTGTTGGTGTATTCCAACATGGGAAGGTGG 3032613 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 |||| |||||||||||||| ||||| || || |||||| || || ||||||| || | Sbjct 3032614 AAATCATTGCCAATGACCAGGGTAACAGGACCACACCAAGCTACGTCGCTTTTACAGATA 3032673 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCC 474501 | || | ||||| |||||||| || | |||| |||| ||||| Sbjct 3032674 CAGAGAGGTTGATTGGCGATGCTGCCAAGAACCAAGTTGCAATGAATCC 3032722 >seq219 Length=695286 Score = 95.1 bits (104), Expect = 8e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 |||||||| || ||||| || |||||||||||||| ||| || | ||||| || ||| Sbjct 695046 CCATCACGACCAGCTCTTCCAATTTCTTGATAATAGGATTCCATTTCCTTAGGGGCACCA 695105 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 ||||| || || | | ||||| |||||| || |||||||||||||| | ||| ||| Sbjct 695106 TAATGAATAACCATCCGGATATCTGCTTTATTGATGCCCATTCCAAATGCCACTGTAGCA 695165 Query 627889 AC 627890 || Sbjct 695166 AC 695167 >seq49 Length=8165964 Score = 86.0 bits (94), Expect = 4e-11 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 474782 GCAACTAAAGATGC-GGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840 || || |||||||| ||| ||| || | || || ||||||||| | | ||||||||||| Sbjct 927552 GCTACAAAAGATGCTGGGCAGATTT-CTGGCCTGAATGTTTTAAGGGTGATTAATGAACC 927610 Query 474841 AACAGCAGCCGCACTTGCTTATGGTCTTGATAAG 474874 ||||||||| || ||||| |||||||| |||||| Sbjct 927611 AACAGCAGCTGCTCTTGCCTATGGTCTGGATAAG 927644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267656483333528