Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq42 120 2e-21
seq219 95.1 8e-14
seq49 86.0 4e-11
>seq42
Length=6198043
Score = 120 bits (132), Expect = 2e-21
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787
|||||| |||| ||| | ||||| || || ||||||||||| || || || || || ||
Sbjct 3033510 GTAACTAATGCTGTAGTCACTGTACCGGCCTATTTTAATGACTCCCAGCGCCAGGCCACA 3033569
Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847
|||||||| |||| |||||||| || ||||| | || ||||| || || ||||||||
Sbjct 3033570 AAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAACGAGCCAACAGCT 3033629
Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876
|| || | || |||||||| ||||||||
Sbjct 3033630 GCTGCTATAGCCTATGGTCTGGATAAGAA 3033658
Score = 95.1 bits (104), Expect = 8e-14
Identities = 76/92 (83%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149
|| ||||| |||||||||||||| || ||||| |||||||| || ||||||||||||||
Sbjct 3035212 GGCATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 3035271
Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181
||||| || || ||||| ||||| |||||
Sbjct 3035272 AATGGCATCCTGAATGTCTCTGCTGTGGATAA 3035303
Score = 93.3 bits (102), Expect = 3e-13
Identities = 122/169 (72%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392
||||||| ||| | ||||| || || ||||| | ||| | ||| |||| || || |
Sbjct 3032554 TTGGTATCGATCTCGGAACCACCTATTCCTGTGTTGGTGTATTCCAACATGGGAAGGTGG 3032613
Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452
|||| |||||||||||||| ||||| || || |||||| || || ||||||| || |
Sbjct 3032614 AAATCATTGCCAATGACCAGGGTAACAGGACCACACCAAGCTACGTCGCTTTTACAGATA 3032673
Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCC 474501
| || | ||||| |||||||| || | |||| |||| |||||
Sbjct 3032674 CAGAGAGGTTGATTGGCGATGCTGCCAAGAACCAAGTTGCAATGAATCC 3032722
>seq219
Length=695286
Score = 95.1 bits (104), Expect = 8e-14
Identities = 94/122 (77%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828
|||||||| || ||||| || |||||||||||||| ||| || | ||||| || |||
Sbjct 695046 CCATCACGACCAGCTCTTCCAATTTCTTGATAATAGGATTCCATTTCCTTAGGGGCACCA 695105
Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888
||||| || || | | ||||| |||||| || |||||||||||||| | ||| |||
Sbjct 695106 TAATGAATAACCATCCGGATATCTGCTTTATTGATGCCCATTCCAAATGCCACTGTAGCA 695165
Query 627889 AC 627890
||
Sbjct 695166 AC 695167
>seq49
Length=8165964
Score = 86.0 bits (94), Expect = 4e-11
Identities = 77/94 (82%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 474782 GCAACTAAAGATGC-GGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840
|| || |||||||| ||| ||| || | || || ||||||||| | | |||||||||||
Sbjct 927552 GCTACAAAAGATGCTGGGCAGATTT-CTGGCCTGAATGTTTTAAGGGTGATTAATGAACC 927610
Query 474841 AACAGCAGCCGCACTTGCTTATGGTCTTGATAAG 474874
||||||||| || ||||| |||||||| ||||||
Sbjct 927611 AACAGCAGCTGCTCTTGCCTATGGTCTGGATAAG 927644
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3267656483333528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |