Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq7014 203 4e-47 seq31 185 1e-41 >seq7014 Length=15999421 Score = 203 bits (224), Expect = 4e-47 Identities = 647/993 (65%), Gaps = 13/993 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || ||| |||| ||| | || || || ||||| || || || | Sbjct 6553092 TGTGTCGCAAATATTCTTCCAAACACTTCACCGCAAAAGGATCAACATCAGTATCAAACT 6553151 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| | || ||||||| || |||||| || |||| Sbjct 6553152 TATTAGCAAAGAAGTGGTG---GTTTCGCAGCATCCAGTTCAGGTCTCCTACACCAAACA 6553208 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | || || || |||| || ||||| | || ||||| | ||| | Sbjct 6553209 CACAGACAGAGCGAACATGAACTCCACTGCACGGTGGGTAGGGTGCACCTTTAGACACAT 6553268 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | |||||| ||||||||||||| |||||||| || | || | ||| || || ||| | Sbjct 6553269 CTCCTTCGAAGTACTGCCACTTGACAAACCTAGCCAGTGCATTCATATCAGAAACGTCAT 6553328 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | || | ||| || | ||| || || || ||| |||| || | ||| | || ||||| Sbjct 6553329 ACTTCT-CATTAGAAGAAACAGCGCCTGGGACGTCGGGGATTCTCTGAATCGTTGCCCAT 6553387 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 | || || || || ||||| ||||| || | ||| || || || | |||| || Sbjct 6553388 AAGTACTCATCAGGACTGTAAGTGTCTTTTGCCCACTCAATAAATTTGAGGATTTTGCTA 6553447 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | | |||| || | |||| | || ||||| || || || || || || Sbjct 6553448 TTTTCTAATACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 6553507 Query 160464 ATCG--GTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTT 160521 || | |||| | | |||||| | |||||| ||| ||||| ||| || | Sbjct 6553508 ATTGGAGTATTG--AGAGGCGGTAGTTGTTTGTCTATACCTGTGTTTTTCACTTTACCAT 6553565 Query 160522 TCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCT 160581 || | | | | | || |||||||| || || | ||||| ||| || | Sbjct 6553566 CAACAATCTCATAGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTT 6553625 Query 160582 CTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGA 160641 | | ||||| | || | || | ||| | | || || || || |||| ||||| | Sbjct 6553626 CCAAGCTGTTTTCGCCTTTAAGGGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTA 6553685 Query 160642 GCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC-TCAGGTCGTGC 160700 |||||||| | || || | |||||| | || ||||| || | | || | | Sbjct 6553686 TAGGAAAGTCCATGCCACAGAGGTTTATTAGATATTTCCAGTTTGAACTTCTTCTAAAG- 6553744 Query 160701 AGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTC 160760 || || |||||||||||||||||||||| || | |||||| ||||| || || || || Sbjct 6553745 AGATCTTTCATGCAATTAATATCTGCCTGTACCCTGCTCCATGAAGCATATACAACACTC 6553804 Query 160761 TCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGA 160820 |||| | |||| | |||||| ||||| ||||| || || ||||| ||| | | | Sbjct 6553805 TCTAACTGGCTGGATATAAAGACATTATCAAAACAGGAGACTATTCCTTTCACAG-CTGT 6553863 Query 160821 AAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879 || || | || | | |||| || || || | || || | |||||||| || || Sbjct 6553864 AAAAAAAGATTCTGGAGATTTTCTATCAACATGGATACAGTAAAAATTCTGAGGAGCATA 6553923 Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939 ||| | || || | || || | ||||||||| || |||| | ||| || ||||| || Sbjct 6553924 GATTGATCTCAGAAGTCTGTCAAGCATCTCTATTTTGTGATAAACCACTATTGAGTAAGC 6553983 Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGAT 160999 || ||||| || | || || || || | | | | ||| || | | ||||||| Sbjct 6553984 AATTGGAAATTCTGCTTCTTCATTGCTGAGAGGTTCCATAATGTATTTCCTCATCTTGAT 6554043 Query 161000 AAAATAATCACAATCCCGCGTCATGTTGATATA 161032 ||| | |||| || |||||||| ||||| Sbjct 6554044 GAAAGAGGCACAGTCTGTTGTCATGTTAATATA 6554076 >seq31 Length=16788233 Score = 185 bits (204), Expect = 1e-41 Identities = 594/909 (65%), Gaps = 26/909 (3%) Strand=Plus/Minus Query 160062 TCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGCGAACAGATGG 160121 || ||||| |||| ||| |||| || || |||||| || || || | || ||| Sbjct 14019252 TCGAGACACTGGATGGCCGCATCGTCTACTTCGGGGTCGAACTTGTTGGCCAGGAGTTGG 14019193 Query 160122 TGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATG 160181 | | | | || |||||| |||||| |||| |||| | ||||||||| || | Sbjct 14019192 CGC---TGCCGCAGCATCCAGGCCACGTCCCCGGCCCCGTAGACGCAGACGCTGCGCTGG 14019136 Query 160182 TGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT--CACCTTCGTAGTACT 160239 |||| |||| |||||||| | ||||| || | ||| | || || ||||| Sbjct 14019135 AAGCGGCCGGTGCAGGGCGGGTAGGGCGCTCCG--CGGCTCGTGTCTCCGTCCAGGTACT 14019078 Query 160240 GCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGG 160299 ||||||| || | | || | ||| | ||||||||| || | | | |||| | | Sbjct 14019077 GCCACTTGACCAGGCGGGGCAGCGCGTTCATGTCGGACGTCTGGAACTTGTCGCTGTACG 14019018 Query 160300 GAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGC 160359 | ||||| ||||| ||||||||| || | || |||||||||| ||| |||||||||| Sbjct 14019017 GCACGGCGCCGGGCACGCCGGGCGCGCGGTTCAGCGTGGCCCACACGTGCTCGTCGGGGC 14018958 Query 160360 TGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAAC-CTGTCCCGCAGAACGTGA 160418 |||| |||||||| | ||| || | ||| | ||| | |||| ||| ||||| Sbjct 14018957 TGTAGGTGTCCTTGGCCCAATCGAGGAA-GCGCCGCGCCGCGGGGTCCTCCAGCACGTGC 14018899 Query 160419 GTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATA 160478 ||| ||| | || | | | ||| |||||||| | ||| ||||| ||| | Sbjct 14018898 CGCACGAAGGCCCGCGTGGCCGCGATGTAGGCGCTGCCCGTGAACATCGGCGAGGGCAGC 14018839 Query 160479 GGCGGC-GTGTCTTTGTCCTGACCG-GTGTTAGACACCACTCCTTTCACCAGCGCGTGTC 160536 |||| | | | ||| | || ||| | | ||| || ||||| || ||| Sbjct 14018838 GGCGACGGCGACTTCTCCGTGGCCGTGCGGGAGATGGAGGTC--TTCACGAG---GTGCT 14018784 Query 160537 GCTTCTTCCACCTGACCATCTTGT--GCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGC 160594 | | |||||| | || ||||| || || | | | |||| ||| | ||||| Sbjct 14018783 GGTACTTCCAGCGCTCCCGCTTGTAGGCCGTCGGCTTC--TCCGACTCCATGCTGTTCTG 14018726 Query 160595 ACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGT 160654 || | ||| |||| ||| ||||| ||| ||||||| || |||||||| Sbjct 14018725 CCCCTGCAGCACCCGCAGCGCGCGGACAATCTCCGCGTTGGTCTTGATGGGGAAGTCGGT 14018666 Query 160655 ACCGCACAAGTTTATCACGTACTTCCATTTC---GCGCTCAGGTCGTGCAGGTCCCTCAT 160711 |||||| | | | | ||| ||| | | |||| | |||||||| ||| Sbjct 14018665 GCCGCACGTGGTGAGGATGTAGCGCCAGGGCACGGGGCTCCG---CAGCAGGTCCTGCAT 14018609 Query 160712 GCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACT 160771 ||| || | || ||||||| ||| |||||| |||||||| ||| |||| || || Sbjct 14018608 GCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAGGCGTACACCACGCTCTCCAGGCGGCT 14018549 Query 160772 GGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTT 160831 |||||| |||||||| ||| || | |||| | ||| ||| | ||| Sbjct 14018548 GGCCACGAAGACGTTGGGGAAGCAGGCGGCGATGGCACGCACGGCCTGCTGGAAGGCGGC 14018489 Query 160832 ATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAG 160891 ||||| | ||||||||| ||||| || | |||||| |||||||||| | | || Sbjct 14018488 GGGAGCCTTGCCGTCCACGTGGACGCAGTAGACGTTCTGCGGCGCGTAGAGAGAGCGCAG 14018429 Query 160892 CAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTC 160951 | || |||||||||||| ||||| || ||||| || || |||||||| || || || || Sbjct 14018428 GAGCCGCTCGAACATCTCGATCTTGTGGTGGATGACCATGGAGTAGGCAATGGGGAAGTC 14018369 Query 160952 GGTCTCCTC 160960 || ||||| Sbjct 14018368 GGCTTCCTC 14018360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577131275085360