Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq7014 203 4e-47
seq31 185 1e-41
>seq7014
Length=15999421
Score = 203 bits (224), Expect = 4e-47
Identities = 647/993 (65%), Gaps = 13/993 (1%)
Strand=Plus/Plus
Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104
||||||||| || ||| |||| ||| | || || || ||||| || || || |
Sbjct 6553092 TGTGTCGCAAATATTCTTCCAAACACTTCACCGCAAAAGGATCAACATCAGTATCAAACT 6553151
Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164
|||| || || | ||||| ||| | || ||||||| || |||||| || ||||
Sbjct 6553152 TATTAGCAAAGAAGTGGTG---GTTTCGCAGCATCCAGTTCAGGTCTCCTACACCAAACA 6553208
Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224
| ||||| || || | || || || |||| || ||||| | || ||||| | ||| |
Sbjct 6553209 CACAGACAGAGCGAACATGAACTCCACTGCACGGTGGGTAGGGTGCACCTTTAGACACAT 6553268
Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284
| |||||| ||||||||||||| |||||||| || | || | ||| || || ||| |
Sbjct 6553269 CTCCTTCGAAGTACTGCCACTTGACAAACCTAGCCAGTGCATTCATATCAGAAACGTCAT 6553328
Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343
| || | ||| || | ||| || || || ||| |||| || | ||| | || |||||
Sbjct 6553329 ACTTCT-CATTAGAAGAAACAGCGCCTGGGACGTCGGGGATTCTCTGAATCGTTGCCCAT 6553387
Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403
| || || || || ||||| ||||| || | ||| || || || | |||| ||
Sbjct 6553388 AAGTACTCATCAGGACTGTAAGTGTCTTTTGCCCACTCAATAAATTTGAGGATTTTGCTA 6553447
Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463
| | |||| || | |||| | || ||||| || || || || || ||
Sbjct 6553448 TTTTCTAATACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 6553507
Query 160464 ATCG--GTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTT 160521
|| | |||| | | |||||| | |||||| ||| ||||| ||| || |
Sbjct 6553508 ATTGGAGTATTG--AGAGGCGGTAGTTGTTTGTCTATACCTGTGTTTTTCACTTTACCAT 6553565
Query 160522 TCACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCT 160581
|| | | | | | || |||||||| || || | ||||| ||| || |
Sbjct 6553566 CAACAATCTCATAGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTT 6553625
Query 160582 CTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGA 160641
| | ||||| | || | || | ||| | | || || || || |||| ||||| |
Sbjct 6553626 CCAAGCTGTTTTCGCCTTTAAGGGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTA 6553685
Query 160642 GCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGC-TCAGGTCGTGC 160700
|||||||| | || || | |||||| | || ||||| || | | || | |
Sbjct 6553686 TAGGAAAGTCCATGCCACAGAGGTTTATTAGATATTTCCAGTTTGAACTTCTTCTAAAG- 6553744
Query 160701 AGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTC 160760
|| || |||||||||||||||||||||| || | |||||| ||||| || || || ||
Sbjct 6553745 AGATCTTTCATGCAATTAATATCTGCCTGTACCCTGCTCCATGAAGCATATACAACACTC 6553804
Query 160761 TCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGA 160820
|||| | |||| | |||||| ||||| ||||| || || ||||| ||| | | |
Sbjct 6553805 TCTAACTGGCTGGATATAAAGACATTATCAAAACAGGAGACTATTCCTTTCACAG-CTGT 6553863
Query 160821 AAGAACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTA 160879
|| || | || | | |||| || || || | || || | |||||||| || ||
Sbjct 6553864 AAAAAAAGATTCTGGAGATTTTCTATCAACATGGATACAGTAAAAATTCTGAGGAGCATA 6553923
Query 160880 GATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGC 160939
||| | || || | || || | ||||||||| || |||| | ||| || ||||| ||
Sbjct 6553924 GATTGATCTCAGAAGTCTGTCAAGCATCTCTATTTTGTGATAAACCACTATTGAGTAAGC 6553983
Query 160940 TATCGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGAT 160999
|| ||||| || | || || || || | | | | ||| || | | |||||||
Sbjct 6553984 AATTGGAAATTCTGCTTCTTCATTGCTGAGAGGTTCCATAATGTATTTCCTCATCTTGAT 6554043
Query 161000 AAAATAATCACAATCCCGCGTCATGTTGATATA 161032
||| | |||| || |||||||| |||||
Sbjct 6554044 GAAAGAGGCACAGTCTGTTGTCATGTTAATATA 6554076
>seq31
Length=16788233
Score = 185 bits (204), Expect = 1e-41
Identities = 594/909 (65%), Gaps = 26/909 (3%)
Strand=Plus/Minus
Query 160062 TCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGCGAACAGATGG 160121
|| ||||| |||| ||| |||| || || |||||| || || || | || |||
Sbjct 14019252 TCGAGACACTGGATGGCCGCATCGTCTACTTCGGGGTCGAACTTGTTGGCCAGGAGTTGG 14019193
Query 160122 TGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGACGGAACGTATG 160181
| | | | || |||||| |||||| |||| |||| | ||||||||| || |
Sbjct 14019192 CGC---TGCCGCAGCATCCAGGCCACGTCCCCGGCCCCGTAGACGCAGACGCTGCGCTGG 14019136
Query 160182 TGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT--CACCTTCGTAGTACT 160239
|||| |||| |||||||| | ||||| || | ||| | || || |||||
Sbjct 14019135 AAGCGGCCGGTGCAGGGCGGGTAGGGCGCTCCG--CGGCTCGTGTCTCCGTCCAGGTACT 14019078
Query 160240 GCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTACATCAGGG 160299
||||||| || | | || | ||| | ||||||||| || | | | |||| | |
Sbjct 14019077 GCCACTTGACCAGGCGGGGCAGCGCGTTCATGTCGGACGTCTGGAACTTGTCGCTGTACG 14019018
Query 160300 GAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGC 160359
| ||||| ||||| ||||||||| || | || |||||||||| ||| ||||||||||
Sbjct 14019017 GCACGGCGCCGGGCACGCCGGGCGCGCGGTTCAGCGTGGCCCACACGTGCTCGTCGGGGC 14018958
Query 160360 TGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAAC-CTGTCCCGCAGAACGTGA 160418
|||| |||||||| | ||| || | ||| | ||| | |||| ||| |||||
Sbjct 14018957 TGTAGGTGTCCTTGGCCCAATCGAGGAA-GCGCCGCGCCGCGGGGTCCTCCAGCACGTGC 14018899
Query 160419 GTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATA 160478
||| ||| | || | | | ||| |||||||| | ||| ||||| ||| |
Sbjct 14018898 CGCACGAAGGCCCGCGTGGCCGCGATGTAGGCGCTGCCCGTGAACATCGGCGAGGGCAGC 14018839
Query 160479 GGCGGC-GTGTCTTTGTCCTGACCG-GTGTTAGACACCACTCCTTTCACCAGCGCGTGTC 160536
|||| | | | ||| | || ||| | | ||| || ||||| || |||
Sbjct 14018838 GGCGACGGCGACTTCTCCGTGGCCGTGCGGGAGATGGAGGTC--TTCACGAG---GTGCT 14018784
Query 160537 GCTTCTTCCACCTGACCATCTTGT--GCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGC 160594
| | |||||| | || ||||| || || | | | |||| ||| | |||||
Sbjct 14018783 GGTACTTCCAGCGCTCCCGCTTGTAGGCCGTCGGCTTC--TCCGACTCCATGCTGTTCTG 14018726
Query 160595 ACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGT 160654
|| | ||| |||| ||| ||||| ||| ||||||| || ||||||||
Sbjct 14018725 CCCCTGCAGCACCCGCAGCGCGCGGACAATCTCCGCGTTGGTCTTGATGGGGAAGTCGGT 14018666
Query 160655 ACCGCACAAGTTTATCACGTACTTCCATTTC---GCGCTCAGGTCGTGCAGGTCCCTCAT 160711
|||||| | | | | ||| ||| | | |||| | |||||||| |||
Sbjct 14018665 GCCGCACGTGGTGAGGATGTAGCGCCAGGGCACGGGGCTCCG---CAGCAGGTCCTGCAT 14018609
Query 160712 GCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACT 160771
||| || | || ||||||| ||| |||||| |||||||| ||| |||| || ||
Sbjct 14018608 GCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAGGCGTACACCACGCTCTCCAGGCGGCT 14018549
Query 160772 GGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTT 160831
|||||| |||||||| ||| || | |||| | ||| ||| | |||
Sbjct 14018548 GGCCACGAAGACGTTGGGGAAGCAGGCGGCGATGGCACGCACGGCCTGCTGGAAGGCGGC 14018489
Query 160832 ATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAG 160891
||||| | ||||||||| ||||| || | |||||| |||||||||| | | ||
Sbjct 14018488 GGGAGCCTTGCCGTCCACGTGGACGCAGTAGACGTTCTGCGGCGCGTAGAGAGAGCGCAG 14018429
Query 160892 CAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTC 160951
| || |||||||||||| ||||| || ||||| || || |||||||| || || || ||
Sbjct 14018428 GAGCCGCTCGAACATCTCGATCTTGTGGTGGATGACCATGGAGTAGGCAATGGGGAAGTC 14018369
Query 160952 GGTCTCCTC 160960
|| |||||
Sbjct 14018368 GGCTTCCTC 14018360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577131275085360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |