Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq59 98.7 1e-15 >seq59 Length=4655252 Score = 98.7 bits (108), Expect = 1e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 48075 ACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTT 48134 |||||||||||| | ||| || ||||| ||||||||| |||| || | |||||||| || Sbjct 1772580 ACCATAAGGAGATCTTGGGTAAAAAGGGGTGGTCTCTTTCTGCGGGATTTCTTGCACTTT 1772521 Query 48135 ACCATAAAGTTCACTGGTGGATGCTTGATAGA 48166 ||| |||||||||||||||| ||||| |||| Sbjct 1772520 TCCAAAAAGTTCACTGGTGGAGGCTTGGTAGA 1772489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665393028565520