Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 8e-14 >seq2 Length=38276455 Score = 93.3 bits (102), Expect = 8e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 49866 TCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCA 49925 |||||| |||||| | ||| |||||||| ||||| || || |||||||| ||||||||| Sbjct 2050895 TCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCTTCAGCCAAAAAATTGATGCA 2050954 Query 49926 AAACTACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCC 49981 ||| | ||||||||| || || || || |||||||||| || || | |||| Sbjct 2050955 AAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATGCTACTACTCGTTCTCC 2051010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984326290061100