Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq47 219 7e-51
seq7 219 7e-51
seq132 120 5e-21
seq2 87.8 3e-11
>seq47
Length=5896676
Score = 219 bits (242), Expect = 7e-51
Identities = 202/256 (79%), Gaps = 0/256 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| |||
Sbjct 4266810 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 4266751
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| |||||||| ||||||||||| || | ||| || ||||||||| |
Sbjct 4266750 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 4266691
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| | ||||||| |||| ||||||||||| ||||||||||
Sbjct 4266690 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 4266631
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 4266630 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 4266571
Query 1485710 AAACAAAGGACGAGTA 1485725
| || || ||||||
Sbjct 4266570 ACACGTAGATCGAGTA 4266555
Score = 219 bits (242), Expect = 7e-51
Identities = 202/256 (79%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| |||
Sbjct 4274110 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 4274169
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| |||||||| ||||||||||| || | ||| || ||||||||| |
Sbjct 4274170 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 4274229
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| | ||||||| |||| ||||||||||| ||||||||||
Sbjct 4274230 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 4274289
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 4274290 TGATGCTCATGGCTTTAGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 4274349
Query 1485710 AAACAAAGGACGAGTA 1485725
| || || ||||||
Sbjct 4274350 ACACGTAGATCGAGTA 4274365
Score = 219 bits (242), Expect = 7e-51
Identities = 202/256 (79%), Gaps = 0/256 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| ||||| ||||| |||||| ||||||| |||||| |||
Sbjct 4323212 TGTACTTGGTGACCGCCTTGGTGCCCTCGGAGACCGCGTGCTTGGCCAGCTCGCCGGGCA 4323153
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| |||||||| ||||||||||| || | ||| || ||||||||| |
Sbjct 4323152 GCAGCAGCCGCACGGCCGTCTGGATCTCCCGCGACGTGATGGTCGAGCGCTTGTTGTAGT 4323093
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| | ||||||| |||| ||||||||||| ||||||||||
Sbjct 4323092 GCGCCAGGCGCGACGCCTCGCCGGCGATGCGCTCGAAGATGTCGTTGACGAACGAGTTCA 4323033
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| |||||||||||||||||| ||||||||||
Sbjct 4323032 TGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGTGCACCTGCTTCAGCACCTTGT 4322973
Query 1485710 AAACAAAGGACGAGTA 1485725
| || || ||||||
Sbjct 4322972 ACACGTAGATCGAGTA 4322957
>seq7
Length=15072255
Score = 219 bits (242), Expect = 7e-51
Identities = 195/244 (80%), Gaps = 0/244 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|||||||||||||||||||||| ||||| |||||||||||| ||||||| || ||| |||
Sbjct 699224 TGTACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCTCCGGGCA 699165
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| |||||||||||| ||||||||||| || | | ||| ||| ||||||||| |
Sbjct 699164 GCAGCAGGCGCACGGCCGTCTGGATCTCCCGCGAGGTGATGGTGGAGCGCTTGTTGTAGT 699105
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||||||||| |||||| ||||||| || | ||||||||||| || |||||||
Sbjct 699104 GCGCCAGGCGCGAGGCCTCACCCGCGATGCGCTCAAAGATGTCGTTGACGAAGGAGTTCA 699045
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||||| ||||||||| |||||||||||||||||||
Sbjct 699044 TGATGCCCATGGCCTTGGAGGAGATGCCGGTGTCGGGGTGGACCTGCTTGAGCACCTTGT 698985
Query 1485710 AAAC 1485713
| ||
Sbjct 698984 AGAC 698981
>seq132
Length=242107
Score = 120 bits (132), Expect = 5e-21
Identities = 167/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||||||||| |||||||| || || || || || ||| ||||||| || || |||
Sbjct 116934 TGTACTTGGTGACAGCCTTGGTGCCTTCGGACACAGCATGCTTGGCCAGCTCACCAGGCA 116875
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| || |||||||| ||||| | ||| | | || ||| ||| ||| | ||| || |
Sbjct 116874 GCAGGAGCCGCACGGCCGTCTGCACCTCTCTGCTGGTGATGGTGGAGCGGTGGTT-GTAC 116816
Query 1485590 -GCGCCAGGCG-GCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTT 1485647
| |||||||| | || | | |||| | || || | ||||| ||||||||||||||
Sbjct 116815 TGAGCCAGGCGCGACGCCTCCACTGCC-AGCCGCTCAAAGATGTCATTGACAAACGAGTT 116757
Query 1485648 CATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGC 1485696
|||||| ||| | ||| |||||| || ||| ||||||||||||
Sbjct 116756 CATGATGCTCATGGCCTTGGAGGAGATTCCTGTGTCAGGGTGCACCTGC 116708
>seq2
Length=38276455
Score = 87.8 bits (96), Expect = 3e-11
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 796303 ACCTCCTCGGCGGTCCAAAAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGG 796362
|||||||| || ||||| ||||| ||||||||||| ||||||||| ||| || |||
Sbjct 2053445 ACCTCCTCCGCCGTCCAGAAGGAAGCCTCGGCCTTCTTGTACATCCGCCAGATGTCATGG 2053504
Query 796363 TAGCGGATGGGGAACAGAACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415
|| |||| ||||| | || || || ||||||||| || |||||||| ||
Sbjct 2053505 TACTGGATAGGGAAAATGACGAACCGCCGGGGGTTCTCCCGCAGCAGCGGTTC 2053557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7914950119599654
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |