Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq114 140 2e-28 seq89 140 2e-28 >seq114 Length=3819349 Score = 140 bits (154), Expect = 2e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| | ||| ||||| || | |||| ||||||||| ||||| ||||| || Sbjct 3316217 CCTCCCCTCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3316276 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| |||| ||||| ||||| || || |||||||| | ||||| || | || Sbjct 3316277 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGA 3316336 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || ||||| | || || || ||| | || | ||| ||| || || Sbjct 3316337 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACC 3316396 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||| |||||||| || || |||||||| |||||||||||||| Sbjct 3316397 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3316443 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||| | | ||| ||||| || | |||| ||||||||| ||||| ||||| || Sbjct 3315989 CCACCCCTGAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3316048 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| | || ||||| ||||| || ||||||||||| | ||||| || | || Sbjct 3316049 AGGGTGCGCCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGA 3316108 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || ||||| | || || || || | | || | ||| ||| || || Sbjct 3316109 ATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCAACC 3316168 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| ||| |||||||| || || | ||| || |||||||||||||| Sbjct 3316169 TCAAGGGTGATGGTCTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 3316215 >seq89 Length=7284382 Score = 140 bits (154), Expect = 2e-28 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| | ||| |||||||| | |||| ||||||||| ||||| ||||| || Sbjct 2822197 CCTCCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2822256 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| | || ||||| ||||| || ||||||||||| | ||||| || | || Sbjct 2822257 AGAGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCGGGGGGA 2822316 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||||||||| | || || || || || || || | ||| ||| ||| | Sbjct 2822317 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGTCTCAA 2822374 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | || |||||||| ||||| | |||||| ||||||||||||||| Sbjct 2822375 CCTCCAGAGTGATGGTCTTACCCGTCAAGGTCTTCACAAAGATCTGCATG 2822424 Score = 134 bits (148), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 || || ||||||| | ||| |||||||| | |||| ||||||||| ||||| ||||| Sbjct 2821966 TTACCACCCCTCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCA 2822025 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || || ||||| | || ||||| ||||| || || |||||||| | ||||| || | Sbjct 2822026 GACAGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGG 2822085 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCT 34925 || | ||||||||||| | || || || || || || || | ||| ||| | Sbjct 2822086 GGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC--ATTCTCAATGGTGTCACTGGGTT 2822143 Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || | |||||||||||| || || |||||||| || ||||||||||| Sbjct 2822144 CCACCTCCAAGGTTATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2822195 Score = 131 bits (144), Expect = 1e-25 Identities = 168/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| |||| | |||||| || || | ||| ||||||||| ||||| ||||| || Sbjct 2822425 CCTCCTCTCAGGCGCAGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 2822484 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| ||||| |||| ||||| ||||| || || |||||||| | ||||| || | || Sbjct 2822485 AGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGA 2822544 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | ||||||||||| | || || ||||| || || || | ||| ||| || | Sbjct 2822545 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGTTCCA 2822602 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| ||||| || || || |||||||| || |||||||||||| Sbjct 2822603 CCTCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 2822652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325644429123134