Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq5 138 8e-27 seq219 102 6e-16 >seq5 Length=36382235 Score = 138 bits (152), Expect = 8e-27 Identities = 695/1090 (64%), Gaps = 28/1090 (3%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 ||| | ||||| || |||||||| ||||| | || || || || || || |||||||| Sbjct 990103 GCACTGACATTCAGGATACCATTAGCATCTATGTCGAAAGTTACCTCGATCTGAGGGACT 990044 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | | || || ||||| || | | ||| | ||||| ||| || || || Sbjct 990043 CCACGGGGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAATTGTTGTCCTTT 989984 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT--AGTAACTACAGTTTGATTATCTGAAT 281603 || | | ||||| || | | |||| || ||| | | || || ||||| | Sbjct 989983 GTCATAGCCCTCTCACCTTCATACACCTGGACTAAGACACTGC--TCTGGTTGTCTGAGT 989926 Query 281604 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662 | || || || |||| ||| ||| ||||| || ||||| | | || | | Sbjct 989925 AGGTGGTGAAGG-TCTGCGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGAGCA 989867 Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722 ||||| | ||||||||||| || | || || || || || |||||||| | |||| Sbjct 989866 GTCATCACTCCACCAGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAACAGGAGC 989807 Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | || ||| | |||||| | | ||| | |||||||||||||| | ||| |||||| Sbjct 989806 AGATCTTGCACATTTTCAGACTTGTCACCCATGAGAATAGCTGCTTGCACAGCCGCACCA 989747 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-T 281841 || |||||||||||||| ||||| | | | || || | ||| |||||||| || | Sbjct 989746 TAAGCAACAGCTTCATCTGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 989687 Query 281842 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 || | || || | | |||||||||||||| || || || || | ||||| || || Sbjct 989686 TGCAGCAACTTCT-GGATCTTAGGAATACGAGTGGAGCCCCCCACGAGCACAATCTCCTG 989628 Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961 | ||| |||||| || || | ||| | | || || || || || || | | Sbjct 989627 GATCTGGCCTTTATCAAGCTTGGCATCACGCAGGGCCTTCTCCACCGGCTCCAGGGTACC 989568 Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA- 282019 | || | || | | || || ||||| || | ||| || || | || || Sbjct 989567 ACGGAAAAGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGT--GATGGAGGTGTAGAAG 989510 Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 ||||| || ||||| | || |||| ||||| | | ||| || ||||| || | | Sbjct 989509 TCAATGCCCTCGAAGAGGGAGTCAATCTCAATGCTGGCTTGCGTGGAAGAGCTCAGAGTA 989450 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 282137 || || || | ||||| ||||| | || | | | || | ||| |||| | | Sbjct 989449 CGCTTTGCCCTCTCACAAGCTGTACGCAGCCGCCTCACTGC--TCGCTTATTGCCAGCGA 989392 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATC 282195 || || | || | |||||| ||||| ||| | ||| | || | ||| || || Sbjct 989391 TGTCACGCTTGTGCTTACGCTTGAACTCTTCTACAAA--ATGGTTCACCATACGGTTGTC 989334 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 ||| || || || |||| | || | || | || | | || | || | ||||| Sbjct 989333 AAAGTCCTCCCCACCCAGATGGGTGTCCCCAGCTGTCGACTTCACCTCAAAGATGCCATC 989274 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 |||| | | | | |||||| || || || |||| ||||| || || ||||| Sbjct 989273 CTCAATGGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATT 989214 Query 282316 CATTTCTTTGTCTTG------GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 282369 | | ||| | | || || || | || || |||| |||||| || || || Sbjct 989213 CTTCTCTCCAGCCCGAGTACCTTTCTTGTCCAAGCCGTAGGCAATAGCAGCTGCTGTGGG 989154 Query 282370 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429 || || ||||| | || || || || |||| || | || |||||||| ||||| || Sbjct 989153 CTCGTTGATAATACGCATCACGTTGAGGCCAGTGATGGTACCAGCATCTTTGGTGGCCTG 989094 Query 282430 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTTTC 282488 | || || || || || || || || || || ||||| ||| ||||| |||| || | Sbjct 989093 GCGCTGGGAGTCATTGAAGTAAGCGGGCACTGTGATAACAGCATTCTGTACCTTC-TTCC 989035 Query 282489 CAATATAAGC 282498 | | |||||| Sbjct 989034 CCAGATAAGC 989025 >seq219 Length=695286 Score = 102 bits (112), Expect = 6e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || ||| | |||||||| ||||| || |||||| | ||| | | | ||||| Sbjct 695171 TGTTGTTGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 695112 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 |||||| || || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 695111 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGAAGAGCTGGTCG 695052 Query 131296 TGATGG 131301 |||||| Sbjct 695051 TGATGG 695046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740032118898036