Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq5 138 8e-27
seq219 102 6e-16
>seq5
Length=36382235
Score = 138 bits (152), Expect = 8e-27
Identities = 695/1090 (64%), Gaps = 28/1090 (3%)
Strand=Plus/Minus
Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485
||| | ||||| || |||||||| ||||| | || || || || || || ||||||||
Sbjct 990103 GCACTGACATTCAGGATACCATTAGCATCTATGTCGAAAGTTACCTCGATCTGAGGGACT 990044
Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545
|| | | || || ||||| || | | ||| | ||||| ||| || || ||
Sbjct 990043 CCACGGGGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAATTGTTGTCCTTT 989984
Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGAT--AGTAACTACAGTTTGATTATCTGAAT 281603
|| | | ||||| || | | |||| || ||| | | || || ||||| |
Sbjct 989983 GTCATAGCCCTCTCACCTTCATACACCTGGACTAAGACACTGC--TCTGGTTGTCTGAGT 989926
Query 281604 AAGTTGTAAATACTCTGGATTT-TTTACAAGGAATTGTTGTGTTTCTATCAATAATATTG 281662
| || || || |||| ||| ||| ||||| || ||||| | | || | |
Sbjct 989925 AGGTGGTGAAGG-TCTGCGTTTGTTTGGTGGGAATGGTGGTGTTACGCTTGATGAGAGCA 989867
Query 281663 GTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 281722
||||| | ||||||||||| || | || || || || || |||||||| | ||||
Sbjct 989866 GTCATCACTCCACCAGCTGTCTCGATGCCCAGGGACAGGGGGGTGACATCCAACAGGAGC 989807
Query 281723 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 281782
| || ||| | |||||| | | ||| | |||||||||||||| | ||| ||||||
Sbjct 989806 AGATCTTGCACATTTTCAGACTTGTCACCCATGAGAATAGCTGCTTGCACAGCCGCACCA 989747
Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-T 281841
|| |||||||||||||| ||||| | | | || || | ||| |||||||| || |
Sbjct 989746 TAAGCAACAGCTTCATCTGGATTGATGCTCTTGTTGAGCTCTTTGCCATTGAAGAAGTCC 989687
Query 281842 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901
|| | || || | | |||||||||||||| || || || || | ||||| || ||
Sbjct 989686 TGCAGCAACTTCT-GGATCTTAGGAATACGAGTGGAGCCCCCCACGAGCACAATCTCCTG 989628
Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961
| ||| |||||| || || | ||| | | || || || || || || | |
Sbjct 989627 GATCTGGCCTTTATCAAGCTTGGCATCACGCAGGGCCTTCTCCACCGGCTCCAGGGTACC 989568
Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA- 282019
| || | || | | || || ||||| || | ||| || || | || ||
Sbjct 989567 ACGGAAAAGATCAGCATTGAGCTCCTCGAAGCGGGCACGAGT--GATGGAGGTGTAGAAG 989510
Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079
||||| || ||||| | || |||| ||||| | | ||| || ||||| || | |
Sbjct 989509 TCAATGCCCTCGAAGAGGGAGTCAATCTCAATGCTGGCTTGCGTGGAAGAGCTCAGAGTA 989450
Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 282137
|| || || | ||||| ||||| | || | | | || | ||| |||| | |
Sbjct 989449 CGCTTTGCCCTCTCACAAGCTGTACGCAGCCGCCTCACTGC--TCGCTTATTGCCAGCGA 989392
Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TTACAAGACGATTATC 282195
|| || | || | |||||| ||||| ||| | ||| | || | ||| || ||
Sbjct 989391 TGTCACGCTTGTGCTTACGCTTGAACTCTTCTACAAA--ATGGTTCACCATACGGTTGTC 989334
Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255
||| || || || |||| | || | || | || | | || | || | |||||
Sbjct 989333 AAAGTCCTCCCCACCCAGATGGGTGTCCCCAGCTGTCGACTTCACCTCAAAGATGCCATC 989274
Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315
|||| | | | | |||||| || || || |||| ||||| || || |||||
Sbjct 989273 CTCAATGGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAAGATGAGCACATT 989214
Query 282316 CATTTCTTTGTCTTG------GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 282369
| | ||| | | || || || | || || |||| |||||| || || ||
Sbjct 989213 CTTCTCTCCAGCCCGAGTACCTTTCTTGTCCAAGCCGTAGGCAATAGCAGCTGCTGTGGG 989154
Query 282370 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 282429
|| || ||||| | || || || || |||| || | || |||||||| ||||| ||
Sbjct 989153 CTCGTTGATAATACGCATCACGTTGAGGCCAGTGATGGTACCAGCATCTTTGGTGGCCTG 989094
Query 282430 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCA-TCTGTTACTTCTTTTC 282488
| || || || || || || || || || || ||||| ||| ||||| |||| || |
Sbjct 989093 GCGCTGGGAGTCATTGAAGTAAGCGGGCACTGTGATAACAGCATTCTGTACCTTC-TTCC 989035
Query 282489 CAATATAAGC 282498
| | ||||||
Sbjct 989034 CCAGATAAGC 989025
>seq219
Length=695286
Score = 102 bits (112), Expect = 6e-16
Identities = 98/126 (78%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235
||| || || ||| | |||||||| ||||| || |||||| | ||| | | | |||||
Sbjct 695171 TGTTGTTGCTACAGTGGCATTTGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 695112
Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295
|||||| || || || ||| | || ||| ||||||||||||||||| ||||| |||||
Sbjct 695111 TCATTATGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGAAGAGCTGGTCG 695052
Query 131296 TGATGG 131301
||||||
Sbjct 695051 TGATGG 695046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740032118898036
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |