Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq2 86.0 6e-12 >seq2 Length=38276455 Score = 86.0 bits (94), Expect = 6e-12 Identities = 124/173 (72%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 21125 AGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCA 21184 ||||| ||||| || | || |||||| | ||| | || ||| |||| ||| | ||||| Sbjct 1795520 AGCATATGGGGACCAACGTGTGATGGCCTGGATCGTATCGTTGAGCGCTGTAACATGCCA 1795579 Query 21185 GAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGC--TTACAGCTTGGTCA 21242 ||| | ||||| || |||||| || | |||||||||||||| || ||| | | | || Sbjct 1795580 GAGTTGCAAGTTGGTGACTGGATCCTGTTTGAAAACATGGGTGCCTATACTGTTGCGGCA 1795639 Query 21243 GCTCTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCA 21295 | |||| || || || || |||| | |||| || || ||||| || ||| Sbjct 1795640 G--CTTCTACTTTCAATGGATTCCAGAGGCCAACAATACATTATGTGATGTCA 1795690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463474990416480