Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_024447.1
Length=282356
Score E
Sequences producing significant alignments: (Bits) Value
seq2 138 2e-27
>seq2
Length=38276455
Score = 138 bits (152), Expect = 2e-27
Identities = 127/161 (79%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 58379 GCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATA 58438
|| ||||||||||| ||| | || ||||| || |||||| ||||||||||||| |||||
Sbjct 18725313 GCTTTATGGTGGTATTATGTCTCGAAAGGAATTGAATACCTAGATACAGTGTTCTTCATC 18725254
Query 58439 CTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTT 58498
|| ||||| || || || || |||| ||||| || || ||||| ||||| || |||||
Sbjct 18725253 CTGAGGAAGAAATTCAACCAAATTAGTTTTCTTCATGTCTATCACCATTTCACCATGTTC 18725194
Query 58499 ACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCA 58539
||||| | ||| | |||||||| ||| ||||||| || ||
Sbjct 18725193 ACTTTGTGGTGGATTGGTATTAAGTGGGTTGCAGGTGGACA 18725153
Score = 100 bits (110), Expect = 5e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 58669 GGTACAATTCCATATAGCTATAGGACATACCGCTATGTCCATTTACATAGATTGCCCGTT 58728
||| || |||||| | |||| || || || || |||| ||||| || ||||| || ||
Sbjct 18722577 GGTGCAGTTCCATGTGACTATTGGCCACACAGCATTGTCTATTTATATTGATTGTCCTTT 18722518
Query 58729 TCCAAAATGGACGCAATGGTCAGTTATCATCTATTCTATTACTTTTATATTATTGTTTGG 58788
||| ||||||| ||| ||| || || ||||| |||| || || || || ||||||||
Sbjct 18722517 TCCTAAATGGATGCACTGGGGTGTAATTTTCTATGCTATCACCTTCATTTTCTTGTTTGG 18722458
Query 58789 TAACTTCTATTTTAGAACATACAAG 58813
||||||||| | | | ||||| |||
Sbjct 18722457 TAACTTCTACTATCGGACATATAAG 18722433
Score = 98.7 bits (108), Expect = 2e-15
Identities = 101/132 (77%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 58541 GCATTTTTCGGCGCTCAGTTGAATTCTTTTATCCATGTTATTATGTATAGTTATTATGGT 58600
|| ||||| || |||||| ||||||| ||||| |||||||||||||| | ||||| ||
Sbjct 18723411 GCTTTTTTTGGAGCTCAGATGAATTCATTTATTCATGTTATTATGTACATGTATTACGGA 18723352
Query 58601 ATGGCGGCGTGTGGACATATGTTTAAAAAGTATTTATGGTGGAAGCGTTACCTTACTATA 58660
| || || ||||| | || || | || ||| | |||||||| || ||| | ||||||
Sbjct 18723351 TTAGCTGCCTGTGGCCCTAAAGTTCAGAAATATCTGTGGTGGAAACGGTACTTGACTATA 18723292
Query 58661 ATGCAATTGGTA 58672
|||| ||||||
Sbjct 18723291 TTGCAGTTGGTA 18723280
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 903273587888960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |