Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq22 109 7e-19
seq89 107 3e-18
seq47 105 9e-18
seq49 104 3e-17
>seq22
Length=12138678
Score = 109 bits (120), Expect = 7e-19
Identities = 72/80 (90%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 8650 TGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGG 8709
|||| ||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||
Sbjct 5456196 TGCCCAATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGG 5456255
Query 8710 TTCGATTCCCCGACGAGGAG 8729
||||||||||||||| ||||
Sbjct 5456256 TTCGATTCCCCGACGGGGAG 5456275
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 5456851 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 5456910
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 5456911 CCCGACGGGGAG 5456922
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 5456204 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 5456263
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 5456264 CCCGACGGGGAGG 5456276
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 5456851 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 5456910
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 5456911 CCCGACGGGGAGG 5456923
Score = 100 bits (110), Expect = 4e-16
Identities = 79/94 (84%), Gaps = 2/94 (2%)
Strand=Plus/Minus
Query 139350 CAACTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCA 139409
|| |||| ||||||||| |||||||||||||||||| | |||| |||||||| | ||||
Sbjct 5456278 CACCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCA 5456219
Query 139410 CTATACTAACGAGGATTTTGGTACACGCTGAATG 139443
||||||||||||||| || || ||||| ||||
Sbjct 5456218 CTATACTAACGAGGAATTGGG--CACGCACAATG 5456187
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 5456922 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 5456863
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 5456862 TACTAACGAGGA 5456851
>seq89
Length=7284382
Score = 107 bits (118), Expect = 3e-18
Identities = 77/87 (89%), Gaps = 4/87 (5%)
Strand=Plus/Minus
Query 11716 GTTGTGTAACCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGA 11774
|||||||| | |||||||||||||||||||| ||||| |||| ||||| | |||||||
Sbjct 2824221 GTTGTGTACC---GTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGA 2824165
Query 11775 CCGGGGTTCGATTCCCCGACGAGGAGG 11801
||||||||||||||||||||| |||||
Sbjct 2824164 CCGGGGTTCGATTCCCCGACGGGGAGG 2824138
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2824210 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2824151
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 2824150 CCCGACGGGGAG 2824139
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 2824139 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2824198
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 2824199 TACTAACGAGGA 2824210
>seq47
Length=5896676
Score = 105 bits (116), Expect = 9e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 2004822 TTCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 2004881
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 2004882 CCCCGACGGGGAG 2004894
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGTA-GTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
|||||||||||||||||||| |||| |||| ||||| | |||||||||||||||||||||
Sbjct 2004823 TCCTCGTTAGTATAGTGGTAAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2004882
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 2004883 CCCGACGGGGAGG 2004895
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 2004894 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 2004835
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 2004834 TACTAACGAGGA 2004823
>seq49
Length=8165964
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 2828943 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 2829002
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 2829003 CCCGACGGGGAG 2829014
Score = 102 bits (112), Expect = 1e-16
Identities = 69/76 (91%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784
||| ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||
Sbjct 2828939 CCACTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 2828998
Query 11785 ATTCCCCGACGAGGAG 11800
||||||||||| ||||
Sbjct 2828999 ATTCCCCGACGGGGAG 2829014
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 2829014 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2828955
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 2828954 TACTAACGAGGA 2828943
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652745355415840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |