Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq89 127 2e-24
seq114 125 7e-24
seq84 96.9 3e-15
>seq89
Length=7284382
Score = 127 bits (140), Expect = 2e-24
Identities = 147/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|||||||| ||||| || ||||| || || ||| | || || |||||||||||
Sbjct 2822455 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 2822514
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
|| | || |||| |||||| || || || ||||| |||||||| |||||| ||||
Sbjct 2822515 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 2822574
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | ||| | ||||| |||| ||||| || | ||||| ||||||||| ||||| ||
Sbjct 2822575 ACATTCTCGATGGTGTCACTGGGTTCCACCTCCAAGGTGATGGTTTTGCCAGTCAGGGTC 2822634
Query 133644 TTTACGAAAATCTGCATG 133661
|| ||||| |||||||||
Sbjct 2822635 TTCACGAAGATCTGCATG 2822652
Score = 123 bits (136), Expect = 2e-23
Identities = 146/198 (74%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| || || ||| | ||| || |||||||||||
Sbjct 2821998 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCTTCCAGCTGCTTGCC 2822057
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | || |||| |||||| || || || ||||| |||||||| |||||| |||
Sbjct 2822058 AGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT 2822117
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | ||||| ||||| |||| ||||| || | ||| | ||| ||||| ||||| ||
Sbjct 2822118 CACATTCTCAATGGTGTCACTGGGTTCCACCTCCAAGGTTATGGTCTTGCCAGTCAGGGT 2822177
Query 133643 TTTTACGAAAATCTGCAT 133660
|| ||||| ||||||||
Sbjct 2822178 CTTCACGAAGATCTGCAT 2822195
Score = 113 bits (124), Expect = 4e-20
Identities = 146/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522
||||||||| ||||| || ||||| || || ||| ||| || |||||||||||
Sbjct 2822226 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCGTCTTCCAGCTGCTTGCC 2822285
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || |||| |||||| ||||| || ||||| |||||||| |||||| |||
Sbjct 2822286 AGCGAAGATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT 2822345
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
| | ||||| ||||| ||| ||| || || | |||| ||| || || |||| ||
Sbjct 2822346 CACATTCTCAATGGTGTCACTGGTCTCAACCTCCAGAGTGATGGTCTTACCCGTCAAGGT 2822405
Query 133643 TTTTACGAAAATCTGCATGGCT 133664
|| || || ||||||||| ||
Sbjct 2822406 CTTCACAAAGATCTGCATGCCT 2822427
>seq114
Length=3819349
Score = 125 bits (138), Expect = 7e-24
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516
||| | ||||||||| ||||| || ||||| || || ||| | || || |||||
Sbjct 3316240 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG 3316299
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
|||||| || | || |||| |||||| |||||||| |||||||| ||||| ||||||
Sbjct 3316300 CTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCTTGGATCTT 3316359
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||| | | ||||| ||||| |||| || || || | ||||| ||| ||||| ||
Sbjct 3316360 GGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCTTGCCAGT 3316419
Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660
||| || || || || ||||||||
Sbjct 3316420 CAGGGTCTTCACAAAGATCTGCAT 3316443
Score = 120 bits (132), Expect = 3e-22
Identities = 149/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTG 133516
||| | ||||||||| ||||| || ||||| || || ||| | ||| || |||||
Sbjct 3316012 ATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCTTCCAGCTG 3316071
Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576
|||||| ||| | || |||| |||||| || || || |||||||| ||||| ||||||
Sbjct 3316072 CTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCTTTGTCTTGGATCTT 3316131
Query 133577 TTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636
||| | | |||| ||||| |||| || || || | ||||| ||| ||||| ||
Sbjct 3316132 GGCCTTCACATTTTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCTTGCCAGT 3316191
Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660
|| ||||| || || ||||||||
Sbjct 3316192 CAAGGTTTTCACAAAGATCTGCAT 3316215
>seq84
Length=273125
Score = 96.9 bits (106), Expect = 3e-15
Identities = 92/118 (78%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 148866 TACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTG 148925
||||| || || || | |||||| |||||||||||||| |||| ||||| ||||||
Sbjct 176921 TACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTCCCCAAGTTCTGCTGATTG 176980
Query 148926 CTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983
|| || |||||||| | ||| |||||||||||||| || |||||| || |||||
Sbjct 176981 CTTTTCCTGTTGCAAGAGTCTTTGTACAGCATGTAAGGCGTGCCAGTCTCTGTCTGCG 177038
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483347162926640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |