Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq2 145 9e-30
seq31 109 6e-19
>seq2
Length=38276455
Score = 145 bits (160), Expect = 9e-30
Identities = 406/609 (67%), Gaps = 17/609 (3%)
Strand=Plus/Minus
Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005
||||| ||| | ||||| | || | ||| || || |||| |||| | || | ||||
Sbjct 24910849 GCCAGATCTCTTGGGGATAGAAAATCTTCCACATGGATAAAAGAGTCTGCTGGAATGTAA 24910790
Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065
|| ||||| || ||||| || | || ||||| | || || | || |||| |||||
Sbjct 24910789 TTCTCGTAGTTTTCTCTGGAAGGGCCCAGTACGACTGGCACTGATCCAGCCAGAAGAGCA 24910730
Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125
||| ||||| || ||||| || || |||| | || || ||||||| |||||||||
Sbjct 24910729 TTGTAAAGTTTCTCAGTAATGTAATCTTTGTGGATTGAATTTTCAAACGAAAGATAGAAT 24910670
Query 177126 TTACA--GGAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183
|| || | ||||||| || || |||| | |||| | || ||||| | | |
Sbjct 24910669 TTGCAACTGGAGATAGT--TGGAATTAAGTTTTTATCGTTGACGTAGTCTCCAAAGGCTT 24910612
Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242
||||| ||| || || |||| ||| || ||||| ||| || || || || |
Sbjct 24910611 GGCCGTAGGTATGGATTTCAATGTATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGCA 24910553
Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGG 177301
|| || ||||||||| || || ||||| ||||| || || ||||||| || ||
Sbjct 24910552 TGCTCAGGGTTCCAATTACTTACAACCCAACAAACCAAGTT-TTCTTTGCTTGGCAC--- 24910497
Query 177302 ATTCGATA-CTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCC 177359
||| ||| ||| | || | | | || | | | || ||||| ||||| ||||||||
Sbjct 24910496 -TTC-ATATGTAAAGGAGCCTGTACCGACCATCATGGAGCCATAAGGCACCTGAATATCT 24910439
Query 177360 GAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC-TTGTTTGAAGGG 177418
|| || || | ||| || | || || || || |||| ||| || || | ||| ||
Sbjct 24910438 GAATCACGCCGGTAAGTCAGGGTTAGGTTAAAGAGGTGTTCAATGCCACTCTTTTGTGGA 24910379
Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTC 177478
| | | | | || || || ||||||||||| ||||| || || || | ||| |||| ||
Sbjct 24910378 G-TATGAGTTGGAGACTCCAAGTTCATCCAAATCCATTTCTGGAATGGTGGCCTGGCTTG 24910320
Query 177479 CGTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGC 177538
| ||||| | || |||| | || || ||||| |||| || || || | ||
Sbjct 24910319 CTGAGGTAAATTAGTCAGATCCCAGTTAATGTCCCTGTGATGAATGAGAACTGCGTGGGA 24910260
Query 177539 TTTGTAATA 177547
|||| |||
Sbjct 24910259 CTTGTTATA 24910251
>seq31
Length=16788233
Score = 109 bits (120), Expect = 6e-19
Identities = 184/263 (70%), Gaps = 4/263 (2%)
Strand=Plus/Minus
Query 162723 CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCT 162782
||| ||||| | ||||| || |||||||| | || ||| || |||||||| |||||
Sbjct 14018620 CAGGTCCTGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAGGCGTACACCACGCT 14018561
Query 162783 CTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAG 162842
||||| | |||| || ||||| ||| ||| || | | || | ||||||| |
Sbjct 14018560 CTCCAGGCGGCTGGCCACGAAGACGTTGGGGAAGCAGGCGGCGATGGCACGCACGGCCTG 14018501
Query 162843 TGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCG 162900
||| | |||| | ||| || || ||||| |||||||| | ||||| || |||
Sbjct 14018500 CTGGAAGGCGGCGGGAGC-CTTGCCG-TCCACGTGGACGCAGTAGACGTTCTGCGGCGCG 14018443
Query 162901 TAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATAC 162960
|||| | | ||| | | |||||||||||| ||||| ||||| | || || || ||
Sbjct 14018442 TAGAGAGAGCGCAGGAGCCGCTCGAACATCTCGATCTTGTGGTGGATGACCATGGAGTAG 14018383
Query 162961 GCTATGGGGAACTCAGCCTCCTC 162983
|| |||||||| || || |||||
Sbjct 14018382 GCAATGGGGAAGTCGGCTTCCTC 14018360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 578343890345600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |