Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq2 145 9e-30 seq31 109 6e-19 >seq2 Length=38276455 Score = 145 bits (160), Expect = 9e-30 Identities = 406/609 (67%), Gaps = 17/609 (3%) Strand=Plus/Minus Query 176946 GCCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAA 177005 ||||| ||| | ||||| | || | ||| || || |||| |||| | || | |||| Sbjct 24910849 GCCAGATCTCTTGGGGATAGAAAATCTTCCACATGGATAAAAGAGTCTGCTGGAATGTAA 24910790 Query 177006 TTTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGAT 177065 || ||||| || ||||| || | || ||||| | || || | || |||| ||||| Sbjct 24910789 TTCTCGTAGTTTTCTCTGGAAGGGCCCAGTACGACTGGCACTGATCCAGCCAGAAGAGCA 24910730 Query 177066 CGGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAAT 177125 ||| ||||| || ||||| || || |||| | || || ||||||| ||||||||| Sbjct 24910729 TTGTAAAGTTTCTCAGTAATGTAATCTTTGTGGATTGAATTTTCAAACGAAAGATAGAAT 24910670 Query 177126 TTACA--GGAAGATAGTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGT 177183 || || | ||||||| || || |||| | |||| | || ||||| | | | Sbjct 24910669 TTGCAACTGGAGATAGT--TGGAATTAAGTTTTTATCGTTGACGTAGTCTCCAAAGGCTT 24910612 Query 177184 TCCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACG 177242 ||||| ||| || || |||| ||| || ||||| ||| || || || || | Sbjct 24910611 GGCCGTAGGTATGGATTTCAATGTATTTGCTAAGCTCATTGTAATA-CTTGACTCGAGCA 24910553 Query 177243 TGGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGG 177301 || || ||||||||| || || ||||| ||||| || || ||||||| || || Sbjct 24910552 TGCTCAGGGTTCCAATTACTTACAACCCAACAAACCAAGTT-TTCTTTGCTTGGCAC--- 24910497 Query 177302 ATTCGATA-CTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCC 177359 ||| ||| ||| | || | | | || | | | || ||||| ||||| |||||||| Sbjct 24910496 -TTC-ATATGTAAAGGAGCCTGTACCGACCATCATGGAGCCATAAGGCACCTGAATATCT 24910439 Query 177360 GAGTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC-TTGTTTGAAGGG 177418 || || || | ||| || | || || || || |||| ||| || || | ||| || Sbjct 24910438 GAATCACGCCGGTAAGTCAGGGTTAGGTTAAAGAGGTGTTCAATGCCACTCTTTTGTGGA 24910379 Query 177419 GCTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTC 177478 | | | | | || || || ||||||||||| ||||| || || || | ||| |||| || Sbjct 24910378 G-TATGAGTTGGAGACTCCAAGTTCATCCAAATCCATTTCTGGAATGGTGGCCTGGCTTG 24910320 Query 177479 CGTAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGC 177538 | ||||| | || |||| | || || ||||| |||| || || || | || Sbjct 24910319 CTGAGGTAAATTAGTCAGATCCCAGTTAATGTCCCTGTGATGAATGAGAACTGCGTGGGA 24910260 Query 177539 TTTGTAATA 177547 |||| ||| Sbjct 24910259 CTTGTTATA 24910251 >seq31 Length=16788233 Score = 109 bits (120), Expect = 6e-19 Identities = 184/263 (70%), Gaps = 4/263 (2%) Strand=Plus/Minus Query 162723 CAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCT 162782 ||| ||||| | ||||| || |||||||| | || ||| || |||||||| ||||| Sbjct 14018620 CAGGTCCTGCATGCAGTTGAGGTCGGCCTGCAGCCGGGACCAGGAGGCGTACACCACGCT 14018561 Query 162783 CTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAG 162842 ||||| | |||| || ||||| ||| ||| || | | || | ||||||| | Sbjct 14018560 CTCCAGGCGGCTGGCCACGAAGACGTTGGGGAAGCAGGCGGCGATGGCACGCACGGCCTG 14018501 Query 162843 TGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCG 162900 ||| | |||| | ||| || || ||||| |||||||| | ||||| || ||| Sbjct 14018500 CTGGAAGGCGGCGGGAGC-CTTGCCG-TCCACGTGGACGCAGTAGACGTTCTGCGGCGCG 14018443 Query 162901 TAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATAC 162960 |||| | | ||| | | |||||||||||| ||||| ||||| | || || || || Sbjct 14018442 TAGAGAGAGCGCAGGAGCCGCTCGAACATCTCGATCTTGTGGTGGATGACCATGGAGTAG 14018383 Query 162961 GCTATGGGGAACTCAGCCTCCTC 162983 || |||||||| || || ||||| Sbjct 14018382 GCAATGGGGAAGTCGGCTTCCTC 14018360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578343890345600