Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq23 127 6e-26 seq149 98.7 3e-17 seq89 98.7 3e-17 seq26 98.7 3e-17 seq14 84.2 7e-13 >seq23 Length=6937812 Score = 127 bits (140), Expect = 6e-26 Identities = 72/73 (99%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 2245327 GGCTGAAGTAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2245386 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 2245387 CCCGGGCTTCAGC 2245399 Score = 122 bits (134), Expect = 3e-24 Identities = 70/72 (97%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2224039 GCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2224098 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 2224099 CCGGGCTTCAGC 2224110 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 5999993 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 6000052 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 6000053 CCCGGGCTTCAGC 6000065 Score = 118 bits (130), Expect = 3e-23 Identities = 70/73 (96%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 |||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| Sbjct 6011979 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 6011920 Query 2828 CCCGGGCTTCAGC 2840 ||||||||||||| Sbjct 6011919 CCCGGGCTTCAGC 6011907 Score = 116 bits (128), Expect = 1e-22 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 6138018 GCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 6138077 Query 2829 CCGGGCTTCAGC 2840 |||||||||||| Sbjct 6138078 CCGGGCTTCAGC 6138089 >seq149 Length=153925 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 36266 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 36207 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 36206 CCGGGTTTCGGC 36195 >seq89 Length=7284382 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2824465 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2824406 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2824405 CCGGGTTTCGGC 2824394 >seq26 Length=4460307 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| | Sbjct 1045312 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1045253 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1045252 CCGGGTTTCGGC 1045241 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1603128 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1603187 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1603188 CCGGGTTTCGGC 1603199 >seq14 Length=6417851 Score = 84.2 bits (92), Expect = 7e-13 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 |||| | |||||||| ||||||||| |||||||||||||||||||||||||||||| Sbjct 2611754 GCTGTAATAGCTCAGGTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 2611809 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15847487495970