Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq23 127 6e-26
seq149 98.7 3e-17
seq89 98.7 3e-17
seq26 98.7 3e-17
seq14 84.2 7e-13
>seq23
Length=6937812
Score = 127 bits (140), Expect = 6e-26
Identities = 72/73 (99%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2245327 GGCTGAAGTAGCTCAGCTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2245386
Query 2828 CCCGGGCTTCAGC 2840
|||||||||||||
Sbjct 2245387 CCCGGGCTTCAGC 2245399
Score = 122 bits (134), Expect = 3e-24
Identities = 70/72 (97%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2224039 GCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2224098
Query 2829 CCGGGCTTCAGC 2840
||||||||||||
Sbjct 2224099 CCGGGCTTCAGC 2224110
Score = 118 bits (130), Expect = 3e-23
Identities = 70/73 (96%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 5999993 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 6000052
Query 2828 CCCGGGCTTCAGC 2840
|||||||||||||
Sbjct 6000053 CCCGGGCTTCAGC 6000065
Score = 118 bits (130), Expect = 3e-23
Identities = 70/73 (96%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827
|||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 6011979 GGCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 6011920
Query 2828 CCCGGGCTTCAGC 2840
|||||||||||||
Sbjct 6011919 CCCGGGCTTCAGC 6011907
Score = 116 bits (128), Expect = 1e-22
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 6138018 GCTGAAGTAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 6138077
Query 2829 CCGGGCTTCAGC 2840
||||||||||||
Sbjct 6138078 CCGGGCTTCAGC 6138089
>seq149
Length=153925
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 36266 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 36207
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 36206 CCGGGTTTCGGC 36195
>seq89
Length=7284382
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 2824465 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2824406
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2824405 CCGGGTTTCGGC 2824394
>seq26
Length=4460307
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||| ||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1045312 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 1045253
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1045252 CCGGGTTTCGGC 1045241
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1603128 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1603187
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1603188 CCGGGTTTCGGC 1603199
>seq14
Length=6417851
Score = 84.2 bits (92), Expect = 7e-13
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824
|||| | |||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 2611754 GCTGTAATAGCTCAGGTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 2611809
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15847487495970
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |