Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq7 197 2e-44
seq47 188 1e-41
seq132 89.7 7e-12
>seq7
Length=15072255
Score = 197 bits (218), Expect = 2e-44
Identities = 183/231 (79%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971
|||||||||||||||||||||| |||||| |||| |||| ||| |||| |||
Sbjct 698982 TCTACAAGGTGCTCAAGCAGGTCCACCCCGACACCGG-----CATC-TCCTCCAAGGCCA 699035
Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031
|| ||||||||||| || ||||||||||| | || ||||||| |||||| |
Sbjct 699036 TGGGCATCATGAACTCCTTCGTCAACGACATCTTTGAGCGCATCGCGGGTGAGGCCTCGC 699095
Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091
||||||||| || |||||||||| ||| ||| | |||| ||||||||||| |||||||
Sbjct 699096 GCCTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCCGTGC 699155
Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||||| | ||| ||| || ||||||| |||||||||||||||||||||||
Sbjct 699156 GCCTGCTGCTGCCCGGAGAGCTGGCCAAGCACGCCGTCTCCGAGGGCACCA 699206
>seq47
Length=5896676
Score = 188 bits (208), Expect = 1e-41
Identities = 180/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 4266570 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 4266623
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|||||||||||||| ||||||||||| |||| ||||||| | |||||| |||
Sbjct 4266624 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 4266683
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| || ||| |||| ||||||||||| ||||||||
Sbjct 4266684 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 4266743
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| |||||| ||||||||||||||||
Sbjct 4266744 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCGGTCTCCGAGGGCACCA 4266792
Score = 188 bits (208), Expect = 1e-41
Identities = 180/229 (79%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || |||| |||||
Sbjct 4322972 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 4323025
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|||||||||||||| ||||||||||| |||| ||||||| | |||||| |||
Sbjct 4323026 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 4323085
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| || ||| |||| ||||||||||| ||||||||
Sbjct 4323086 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 4323145
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| |||||| ||||||||||||||||
Sbjct 4323146 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCGGTCTCCGAGGGCACCA 4323194
Score = 179 bits (198), Expect = 5e-39
Identities = 178/229 (78%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973
||||||||||| ||||||||||||||| || || |||| || || |||||
Sbjct 4274350 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCTAAAGCCATG 4274297
Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033
|||||||||||||| ||||||||||| |||| ||||||| | |||||| |||
Sbjct 4274296 AGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCGTCGCGC 4274237
Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093
||||||| || |||||||||| || ||| |||| ||||||||||| ||||||||
Sbjct 4274236 CTGGCGCACTACAACAAGCGCTCGACCATCACGTCGCGGGAGATCCAGACGGCCGTGCGG 4274177
Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142
||| | ||| |||||| ||||||| |||||| ||||||||||||||||
Sbjct 4274176 CTGCTGCTGCCCGGCGAGCTGGCCAAGCACGCGGTCTCCGAGGGCACCA 4274128
>seq132
Length=242107
Score = 89.7 bits (98), Expect = 7e-12
Identities = 133/186 (72%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017
|||| |||| ||||| |||||||||||||||||||| ||||| | || || | ||
Sbjct 116732 CTCCTCCAAGGCCATGAGCATCATGAACTCGTTTGTCAATGACATCTTTGAGCGGCT-GG 116790
Query 725018 CA-CCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGA 725076
|| ||||| |||||||| | | |||| | ||| ||| ||| || | |||
Sbjct 116791 CAGTGGAGGCGTCGCGCCTGGCTCAGTACAACCACCGCTCCACCATCACCAGCAGAGAGG 116850
Query 725077 TCCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGG 725136
| ||||| |||||||| || | ||| || || ||||||| ||| || || ||||| |
Sbjct 116851 TGCAGACGGCCGTGCGGCTCCTGCTGCCTGGTGAGCTGGCCAAGCATGCTGTGTCCGAAG 116910
Query 725137 GCACCA 725142
||||||
Sbjct 116911 GCACCA 116916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7176635837902132
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |