Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq89 134 1e-26 seq114 132 4e-26 >seq89 Length=7284382 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || || || |||| ||||||||||| || || || Sbjct 2822232 CTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCGTCTTCCAGCTGCTTGCCAGCGAA 2822291 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | |||| || |||||||||| |||||| ||||| | | Sbjct 2822292 GATCAGCCTCTGCTGATCGGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 2822351 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || ||||||||||| || ||||| Sbjct 2822352 CTCAATGGTGTCACTGGTCTCAACCTCCAGAGTGATGGTCTTACCCGTCAAGGTCTTCAC 2822411 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 2822412 AAAGATCTGCAT 2822423 Score = 134 bits (148), Expect = 1e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 2822460 CTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAA 2822519 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | |||| || |||||||||| |||||| ||| | | | Sbjct 2822520 GATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 2822579 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||||||||| ||||| ||||| || |||| || ||||| Sbjct 2822580 CTCGATGGTGTCACTGGGTTCCACCTCCAAGGTGATGGTTTTGCCAGTCAGGGTCTTCAC 2822639 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 2822640 GAAGATCTGCAT 2822651 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | || || ||| |||| ||||||||||| || ||||| Sbjct 2822004 CTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCTTCCAGCTGCTTGCCAGCAAA 2822063 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || |||||| || | |||| || |||||||||| |||||| ||||| | | Sbjct 2822064 GATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 2822123 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | ||||||||||| || || || || || |||| || ||||| Sbjct 2822124 CTCAATGGTGTCACTGGGTTCCACCTCCAAGGTTATGGTCTTGCCAGTCAGGGTCTTCAC 2822183 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 2822184 GAAGATCTGCAT 2822195 >seq114 Length=3819349 Score = 132 bits (146), Expect = 4e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || ||||| ||| | || |||||| || |||||||| || | || ||| ||| |||| Sbjct 3316003 CAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTC 3316062 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| || || || |||| || |||||| || | |||| || || ||||| Sbjct 3316063 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCTTTGTC 3316122 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 |||||| ||||| | || | | ||||| || | ||| ||||| | ||||| || Sbjct 3316123 TTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGT 3316182 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || ||||| ||||||||||| |||||||| Sbjct 3316183 CTTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 3316215 Score = 118 bits (130), Expect = 1e-21 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 35524 CAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTC 35583 || ||||| ||| | || |||||| || |||||||| || | || ||| ||| | || Sbjct 3316231 CAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATC 3316290 Query 35584 GTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTC 35643 ||||||||||| || ||||| |||| || |||||| || | ||||| || || ||||| Sbjct 3316291 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTC 3316350 Query 35644 CATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGT 35703 |||||| ||||| | | | ||||| || | ||| ||||| | ||||| || Sbjct 3316351 TTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGT 3316410 Query 35704 TTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || |||| || |||||||| |||||||| Sbjct 3316411 CTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3316443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450724932864880