Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq1 140 4e-28
seq2 132 7e-26
seq84 93.3 6e-14
>seq1
Length=54145758
Score = 140 bits (154), Expect = 4e-28
Identities = 122/152 (80%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 39623 AAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGC 39682
||| |||||| | |||||||||| ||||| | ||| || ||||| || | |||||||
Sbjct 8045449 AAGACACAATACATTACCTCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGC 8045390
Query 39683 ATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCT 39742
||||| || | ||| || ||||||||||| |||||||| || || |||||||||||||||
Sbjct 8045389 ATTAGGCCCCTCTTCTTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCT 8045330
Query 39743 TCTACTGCTGCAAATGCAACAAGTCTCTCTCC 39774
|| ||||| ||||| ||||| | ||||| ||
Sbjct 8045329 TCAACTGCAGCAAAGGCAACCACCCTCTCACC 8045298
Score = 86.0 bits (94), Expect = 9e-12
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853
||||||||| | ||||| || ||||||||||| ||||||||||||||||| |||||||||
Sbjct 8043358 ATCCACTTCAGAGCCCAGTCTGCTTTCTTCTTGACACAAGGCATTGTTTCAATAGCATTA 8043299
Query 39854 AA 39855
||
Sbjct 8043298 AA 8043297
>seq2
Length=38276455
Score = 132 bits (146), Expect = 7e-26
Identities = 111/136 (82%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
||||||||||||| || | || |||||||| |||||||||||||||| || | || |
Sbjct 2050875 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 2050934
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
| |||||||| || | |||||||| |||||||||||||| ||||| |||||||||||||
Sbjct 2050935 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 2050994
Query 39759 CAACAAGTCTCTCTCC 39774
| || | || |||||
Sbjct 2050995 CTACTACTCGTTCTCC 2051010
Score = 96.9 bits (106), Expect = 5e-15
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369
|||||| |||||||| | || |||||||| || || ||||| || ||||| || |||||
Sbjct 2049589 TGACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCC 2049648
Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATT 39405
||||| || || ||||||||||||||||| |||||
Sbjct 2049649 TTCCAGAGAGATGTTTTCCATGAAATCAAAAGGATT 2049684
Score = 84.2 bits (92), Expect = 3e-11
Identities = 82/106 (77%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936
|||||| | || || || |||| ||||| |||||||||||||| || ||||| || ||
Sbjct 2052499 ATCTTTGATGTACGTGTCAATTAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 2052558
Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982
||||| || || || ||||| | |||||| || ||||| || |||
Sbjct 2052559 AATCTGGAAGCCATAGAAACAACGTGCTTCTGTGATTTGCACTTCT 2052604
>seq84
Length=273125
Score = 93.3 bits (102), Expect = 6e-14
Identities = 123/171 (72%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500
|||| || ||||| ||||| || || |||||| ||| | || || || || || || |
Sbjct 173963 TCCAGCCATAGAAGTGCATGCTGGTCAGTTTGCCATAGTTGGGTTCCGCGATGTGGATGT 174022
Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560
| | ||||| || || ||||||||||||||||| ||||| ||||| || | | | | |
Sbjct 174023 TGAGAGATTGGCTCTGGTCGATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGACAGTTT 174082
Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611
| || | || ||||| | |||||| ||| ||| || | ||| | ||||
Sbjct 174083 TCTGGGAGATCTCCCACACCGTCTTATAAAGCTGCTTCAAGTCAGCAGGAA 174133
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686804166617040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |