Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 seq1 116 3e-21 >seq2 Length=38276455 Score = 127 bits (140), Expect = 2e-24 Identities = 93/108 (86%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| | |||||||||| ||||| ||||| || || |||||||| |||||| Sbjct 2052606 CAAGAAGTGCAAATCACAGAAGCACGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 2052547 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| ||||||||||||||||| || || ||||||||||||||| Sbjct 2052546 ATACATTCAGAAATGTACAGTCTTCTAATTGACACGTACATCAAAGAT 2052499 >seq1 Length=54145758 Score = 116 bits (128), Expect = 3e-21 Identities = 120/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| ||||||||||| ||| | || ||||| || ||| ||||| ||||||| Sbjct 34290672 TGATGGCCTTGCCACCTTGCCATGCTCTTTGCCAGTTCTATGTTCTAAATGGCGAACTGT 34290731 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | |||||| ||||||| || || || || ||||||||||| || || || || || || | Sbjct 34290732 CTTGTCAACTGTATCAGAGGTCTGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 34290791 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || ||||| || || || || Sbjct 34290792 GCTATTCACTGCTCACATACATGATAGCCCATGTCAC 34290828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397396971076930