Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5 241 4e-58 seq42 212 2e-49 seq114 149 2e-30 seq89 131 5e-25 seq40 104 7e-17 seq2 87.8 5e-12 seq1 87.8 5e-12 >seq5 Length=36382235 Score = 241 bits (266), Expect = 4e-58 Identities = 726/1106 (66%), Gaps = 30/1106 (3%) Strand=Plus/Plus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGA-TGCTGTTATTAC 349620 || |||||||| |||||||| || ||| | || ||| || || || ||||||||| || Sbjct 989004 AAGATGAAGGAGATTGCTGAGGCTTATCTGGG-GAAGAAGGTACAGAATGCTGTTATCAC 989062 Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680 || || || || || ||||| ||||||| || || ||||||||||| | ||| | Sbjct 989063 AGTGCCCGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGTACCATCAC 989122 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 || | || || | | || || || || ||||| || || || ||||| || || | Sbjct 989123 TGGCCTCAACGTGATGCGTATTATCAACGAGCCCACAGCAGCTGCTATTGCCTACGGCTT 989182 Query 349741 TGATAAAATGAGTGACCA------AGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 || || | || | ||| || ||| | || || ||||| || || || || Sbjct 989183 GGACAAGAAAGGTACTCGGGCTGGAGAGAAGAATGTGCTCATCTTTGACTTGGGAGGGGG 989242 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||||||||||| || | || || |||| || || || ||||| || || | || || Sbjct 989243 CACTTTTGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTCGACAGC 989302 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 ||| || || ||||| ||||| || || ||||| || ||| | || |||||||| | Sbjct 989303 TGGGGACACCCATCTGGGTGGGGAGGACTTTGACAACCGTATGGTGAACCATTTTGTAGA 989362 Query 349915 AGAATTTAAGCGTCAAGC-TAAAATTGATAT---TGGAGATAATCCTAGAGCAATGCGTC 349970 ||| || |||||| |||| || ||| || ||| |||| | ||||| || | | Sbjct 989363 AGAGTTCAAGCGT-AAGCACAAGCGTGACATCGCTGGCAATAAGC---GAGCAGTGAGGC 989418 Query 349971 GCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTC-CTTATCATCTACTACCCAAACCTCT 350029 | || | || || ||||| | || |||||| | || | | ||| | || ||| || Sbjct 989419 GGCTGCGTACAGCTTGTGAGAGGGCAAAGCGTACTCTGAGC-TCTTCCACGCAAGCCAGC 989477 Query 350030 ATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGG 350089 ||||| ||||| || || || |||| || |||| | || || || ||||| || Sbjct 989478 ATTGAGATTGACTCCCTCTTCGAGGGCATTGACTTCTACACCTCCATCACTCGTGCCCGC 989537 Query 350090 TTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTA 350149 || || || | | |||||||| | | || |||| || ||||| || | | Sbjct 989538 TTCGAGGAGCTCAATGCTGATCTTTTCCGTGGTACCCTGGAGCCGGTGGAGAAGGCCCTG 989597 Query 350150 AAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACA 350209 ||||| || | ||| ||||| | || | || | || || || || || Sbjct 989598 CGTGATGCCAAGCTTGATAAAGGCCAGATCCAGGAGATTGTGCTCGTGGGGGGCTCCACT 989657 Query 350210 CGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAG 350268 |||||||| || | || |||| || || || || ||||||||||| | | | || Sbjct 989658 CGTATTCCTAAGATCCAGAAGTTGCTGCAGGACTTCTTCAATGGCAAAGAGCTCAACAAG 989717 Query 350269 ATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328 | | || |||||||||||||||||||| |||||||| ||||| || ||| ||||| | Sbjct 989718 AGC-ATCAATCCAGATGAAGCTGTTGCTTATGGTGCGGCTGTGCAAGCAGCTATTCTCAT 989776 Query 350329 TGGAAATAAGAGTTCTAAAATTG---ATGATCTATTACTACTAGATGTAACTCCACTTTC 350385 || | ||| ||| ||| || | ||||| | || | ||||| || || || || Sbjct 989777 GGGTGACAAG---TCTGAAAATGTGCAAGATCTGCTCCTGTTGGATGTCACCCCCCTGTC 989833 Query 350386 GCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGT 350445 || || | || || |||||| ||| ||||||| ||| || | || | || | Sbjct 989834 CCTGGGCATCGAGACAGCTGGTGGAGTGATGACTGCTCTCATCAAGCGTAACACCACCAT 989893 Query 350446 ACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAAC--A 350503 || || ||| | | || || || | || | |||| || ||| ||| || | | Sbjct 989894 TCCCACCAAACAAACGCAGACCTTCACCACCTACTCAGACAACCAG--AGCAGTGTCTTA 989951 Query 350504 ATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTT 350563 | || || | ||||||||| | ||| || || || || ||| || || | ||| Sbjct 989952 GTCCAGGTGTATGAAGGTGAGAGGGCTATGACAAAGGACAACAATTTGCTGGGCAAGTTT 990011 Query 350564 ACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGAT 350623 ||||| | || || ||| || | ||||| |||||||| || || ||||||| Sbjct 990012 GACCTAACGGGCATCCCCCCAGCACCCCGTGGAGTCCCTCAGATCGAGGTAACTTTCGAC 990071 Query 350624 ATTGATTCAAATGGTATTTTAAATGT 350649 || ||| | |||||||| | ||||| Sbjct 990072 ATAGATGCTAATGGTATCCTGAATGT 990097 >seq42 Length=6198043 Score = 212 bits (234), Expect = 2e-49 Identities = 376/541 (70%), Gaps = 12/541 (2%) Strand=Plus/Plus Query 349770 TTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGG 349829 ||||||||||||| | || ||||| || |||||||| ||| | || || ||||||| | Sbjct 3033792 TTCTTATTTTTGACCTTGGAGGTGGCACCTTTGATGTGTCAATTCTGACTATTGAAGATG 3033851 Query 349830 GAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATA 349889 | || ||||| || ||| | ||||| ||||| || ||| | ||||||||||||||||| | Sbjct 3033852 GCATCTTTGAGGTGAAATCCACTGCAGGTGACACTCATTTGGGTGGAGAAGATTTTGACA 3033911 Query 349890 ATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGA 349948 | ||| | || || || || ||||| ||||| ||||| || | || || | Sbjct 3033912 ACCGTATGGTCAACCACTTCATTGCTGAATTCAAGCG-CAAGCACAAGAAAGACATCAGT 3033970 Query 349949 GATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTA 350008 || || |||||| | |||||||| | ||||||||||||||||| |||||| || | Sbjct 3033971 GAGAACAAGAGAGCAGTTCGTCGCCTTCGTACTGCGTGTGAACGTGCAAAGCGTACCCTG 3034030 Query 350009 TCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTT 350068 ||||| | || ||| || ||||||||| |||||||| ||| || | || |||| Sbjct 3034031 TCATCAAGCACACAAGCCAGTATTGAAATCGATTCTCTCTATGAGGGTATTGACTTCTAC 3034090 Query 350069 TCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAA 350126 |||| || || | ||||| || || || || ||| || || || | | || Sbjct 3034091 ACATCCATCACCAGAGCTCGTTTCGAGGA--GCTGAATGCTGACCTGTTCCGTGGCACCC 3034148 Query 350127 TGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAG 350186 ||||||||||||| || | | ||||| || || ||| ||||| |||| Sbjct 3034149 TGGATCCTGTGGAGAAGGCCCTGCGGGATGCCAAGCTGGACAAGTCACAGATCCATGACA 3034208 Query 350187 TAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTT 350246 | || | ||||| || ||||| || || ||||| |||| | | || || || | Sbjct 3034209 TCGTGCTGGTTGGGGGCTCTACTCGCATCCCAAAGATTCAGAAACTGCTTCAAGACTTCT 3034268 Query 350247 TTAATGGCAAAGAACCTT---CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTG 350303 | ||||||||||| || | ||| | || ||||| |||||||| || || ||||||| Sbjct 3034269 TCAATGGCAAAGA--GTTGAACAAGAGC-ATCAATCCTGATGAAGCCGTGGCTTATGGTG 3034325 Query 350304 C 350304 | Sbjct 3034326 C 3034326 Score = 158 bits (174), Expect = 4e-33 Identities = 362/535 (68%), Gaps = 10/535 (2%) Strand=Plus/Minus Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGAT-AATTCTTTGCCATTA 183320 |||||||||| || || |||||||| || || || | | | | || ||||||||||| Sbjct 3034328 CTGCACCATAAGCCACGGCTTCATCAGGATTGAT-GCTCTTGTTCAACTCTTTGCCATTG 3034270 Query 183321 AAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACT 183380 || || ||| ||||| || ||||| ||||| || | ||| || || || || | || Sbjct 3034269 AAGAAGTCTTGAAGCAGTTTCTGAATCTTTGGGATGCGAGTAGAGCCCCCAACCAGCACG 3034210 Query 183381 ACTTCATCGATATT--ACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGT 183438 | |||| ||| | |||| | | | ||| | ||| | | || || ||||| | Sbjct 3034209 ATGTCATGGATCTGTGACTTGTCC-AGCTTG-GCATCCCGCAGGGCCTTCTCCACAGGAT 3034152 Query 183439 CCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATG 183498 ||| || | || | || | | ||| || || | ||||| || | |||| Sbjct 3034151 CCAGGGTGCCACGGAACAGGTCAGCATTCAGCTCCTCGAAACGAGCTCTGGTGATGGATG 3034092 Query 183499 aaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATG 183558 | ||||||||||| | ||| | ||||| |||||||| | |||||| ||||| Sbjct 3034091 TGTAGAAGTCAATACCCTCATAGAGAGAATCGATTTCAATACTGGCTTGTGTGCTTGATG 3034032 Query 183559 ATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTAT 183618 | | || | || || |||||||| || || | || ||||| | || ||| || | Sbjct 3034031 ACAGGGTACGCTTTGCACGTTCACACGCAGTACGAAGGCGACGAACTGCTCTCTTGTTCT 3033972 Query 183619 CTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATG-TTGAAG-TAATCT 183676 | | || |||| || || || | || ||||||| ||| || || |||| || | Sbjct 3033971 CACTGATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATACGGT 3033912 Query 183677 TGTATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATAT 183736 ||| |||||||||| ||||| ||||| || || || ||||| | ||| || ||||| || Sbjct 3033911 TGT--CAAAATCTTCTCCACCCAAATGAGTGTCACCTGCAGTGGATTTCACCTCAAAGAT 3033854 Query 183737 TCCGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAAA 183791 || ||||||||| | | |||||| |||||||| || ||||| || | |||||| Sbjct 3033853 GCCATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAA 3033799 Score = 120 bits (132), Expect = 9e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || |||||| ||||||| | |||||||| |||||||||||||| ||||||| || Sbjct 3033507 ACTGTAACTAATGCTGTAGTCACTGTACCGGCCTATTTTAATGACTCCCAGCGCCAGGCC 3033566 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 |||||||||||||| | |||||| ||| | ||||| || |||| || || || || || Sbjct 3033567 ACAAAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAACGAGCCAACA 3033626 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAA 349746 ||||| || || || ||||| || ||||| Sbjct 3033627 GCTGCTGCTATAGCCTATGGTCTGGATAA 3033655 >seq114 Length=3819349 Score = 149 bits (164), Expect = 2e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| || || ||||| || || || || || ||||| | || ||||||||| Sbjct 3316232 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 3316291 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | |||||||| |||||||| |||||||| || Sbjct 3316292 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCT 3316351 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || ||||| | ||| |||||||| ||||| || | ||| Sbjct 3316352 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTC 3316411 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 3316412 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3316443 Score = 143 bits (158), Expect = 8e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || ||||| || || ||||| || || || || || ||||| | || ||||| ||| Sbjct 3316004 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 3316063 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||| ||||| || | ||||||||||| ||||| |||||||| || Sbjct 3316064 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCTTTGTCT 3316123 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| |||||||| ||||| || | ||| Sbjct 3316124 TGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTC 3316183 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| ||||| |||||||| Sbjct 3316184 TTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 3316215 >seq89 Length=7284382 Score = 131 bits (144), Expect = 5e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || |||||||| ||||| ||||| || || || || || ||||| | || ||||||||| Sbjct 2822440 AGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2822499 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||||||||| ||||| || || || ||| Sbjct 2822500 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 2822559 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| || || | ||| ||||| || || | || | || Sbjct 2822560 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCCAAGGTGATGGTT 2822619 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || || |||||||| Sbjct 2822620 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2822651 Score = 122 bits (134), Expect = 3e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || ||||| || || || || || ||||| | || ||||| ||| Sbjct 2821984 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCT 2822043 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||||||||| ||||| || || || ||| Sbjct 2822044 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 2822103 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || ||||| ||||| | ||| ||||| || || | || | ||| Sbjct 2822104 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACCTCCAAGGTTATGGTC 2822163 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || || || |||||||| Sbjct 2822164 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2822195 >seq40 Length=8742107 Score = 104 bits (114), Expect = 7e-17 Identities = 127/173 (73%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||||||||| | || || ||| || || || || || ||| Sbjct 7887642 ACAGCTGCTGCCATTGCATATGGATTGGACAA---GAGAGAGGGTGAGAAGAACATCCTT 7887586 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | ||||| | |||||||| ||||||||||| || || || ||| |||| | ||| | Sbjct 7887585 GTATTTGACCTGGGTGGTGGAACTTTTGATGTCTCCCTCCTGACAATTGACAATGGAGTC 7887526 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| || || |||||| ||||| || ||||||||||| ||||| Sbjct 7887525 TTTGAAGTTGTGGCTACCAATGGTGACACACACCTGGGTGGAGAAGACTTTGA 7887473 Score = 96.9 bits (106), Expect = 1e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 349601 GTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACA 349660 || ||| |||||||| ||||||| |||||||| || |||||||| |||||| || ||| Sbjct 7887844 GTTACTCATGCTGTTGTTACTGTGCCAGCCTACTTCAATGATGCTCAGCGTCAGGCTACA 7887785 Query 349661 AAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 ||||||||||| | ||||| ||||| || || | | || |||||||| || Sbjct 7887784 AAAGATGCTGGTACAATTGCTGGGTTGAACGTGATGCGCATTATTAATGAGCC 7887732 Score = 95.1 bits (104), Expect = 4e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 |||||||| | ||| | |||||||||||||| || || || ||| | || || | | Sbjct 7886877 ATTGATGAGATTGTTCTTGTTGGTGGTTCTACTCGCATCCCCAAAATACAGCAACTTGTT 7886818 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 ||||| || ||||| || || |||||| | |||||||| ||||| ||||| || Sbjct 7886817 AAAGAGTTCTTCAATGGGAAGGAGCCTTCTCGTGGCATTAATCCGGATGAGGCTGTAGCC 7886758 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 |||||||| ||||||||||| Sbjct 7886757 TATGGTGCAGCTGTTCAGGC 7886738 Score = 93.3 bits (102), Expect = 1e-13 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| ||||||||||||||||| || ||||| ||||| || ||||| |||||| | Sbjct 7886736 CAGCCTGAACAGCTGCACCATAGGCTACAGCCTCATCCGGATTAATGCCACGAGAAGGCT 7886795 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 | || ||||| || || ||| || | ||| || ||||| || || | ||| ||||||| Sbjct 7886796 CCTTCCCATTGAAGAACTCTTTAACAAGTTGCTGTATTTTGGGGATGCGAGTAGAACCAC 7886855 Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429 | || | || | ||||| |||| | || | | | || |||| | |||||| | Sbjct 7886856 CAACAAGAACAATCTCATCAATATCAGACTTCTTTAGGTCAGAGTCTTCCAGAACTTTCT 7886915 Query 183430 CAACAGGGTCCATAGT 183445 |||||| | ||| || Sbjct 7886916 GAACAGGCTTCATTGT 7886931 >seq2 Length=38276455 Score = 87.8 bits (96), Expect = 5e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 223722 CCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCTTTT 223781 |||||||||| || | ||||| ||||| || | |||||||||||| ||||| || | Sbjct 2050875 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 2050934 Query 223782 TCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAAACG 223841 ||| |||||| |||| ||||| || ||||| || || ||||| || ||||| | Sbjct 2050935 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 2050994 Query 223842 CTACTAATCGT 223852 |||||| |||| Sbjct 2050995 CTACTACTCGT 2051005 >seq1 Length=54145758 Score = 87.8 bits (96), Expect = 5e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 223722 CCTCATCTCTTGATATTAA-TTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCTTT 223780 |||||||||| | || ||| |||||| ||||| || ||||||||||||| || ||||| Sbjct 8045433 CCTCATCTCT-GCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTAGGCCCCTCTTC 8045375 Query 223781 TTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAAAC 223840 |||| ||||||||| || ||| | || ||||| || || ||||| || |||||| Sbjct 8045374 TTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAG 8045315 Query 223841 GCTAC 223845 || || Sbjct 8045314 GCAAC 8045310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515017818595358