Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq5 241 4e-58
seq42 212 2e-49
seq114 149 2e-30
seq89 131 5e-25
seq40 104 7e-17
seq2 87.8 5e-12
seq1 87.8 5e-12
>seq5
Length=36382235
Score = 241 bits (266), Expect = 4e-58
Identities = 726/1106 (66%), Gaps = 30/1106 (3%)
Strand=Plus/Plus
Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGA-TGCTGTTATTAC 349620
|| |||||||| |||||||| || ||| | || ||| || || || ||||||||| ||
Sbjct 989004 AAGATGAAGGAGATTGCTGAGGCTTATCTGGG-GAAGAAGGTACAGAATGCTGTTATCAC 989062
Query 349621 TGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGC 349680
|| || || || || ||||| ||||||| || || ||||||||||| | ||| |
Sbjct 989063 AGTGCCCGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGTACCATCAC 989122
Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740
|| | || || | | || || || || ||||| || || || ||||| || || |
Sbjct 989123 TGGCCTCAACGTGATGCGTATTATCAACGAGCCCACAGCAGCTGCTATTGCCTACGGCTT 989182
Query 349741 TGATAAAATGAGTGACCA------AGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794
|| || | || | ||| || ||| | || || ||||| || || || ||
Sbjct 989183 GGACAAGAAAGGTACTCGGGCTGGAGAGAAGAATGTGCTCATCTTTGACTTGGGAGGGGG 989242
Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854
||||||||||| || | || || |||| || || || ||||| || || | || ||
Sbjct 989243 CACTTTTGATGTGTCCATCCTTACCATTGAGGATGGCATCTTTGAGGTGAAGTCGACAGC 989302
Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914
||| || || ||||| ||||| || || ||||| || ||| | || |||||||| |
Sbjct 989303 TGGGGACACCCATCTGGGTGGGGAGGACTTTGACAACCGTATGGTGAACCATTTTGTAGA 989362
Query 349915 AGAATTTAAGCGTCAAGC-TAAAATTGATAT---TGGAGATAATCCTAGAGCAATGCGTC 349970
||| || |||||| |||| || ||| || ||| |||| | ||||| || | |
Sbjct 989363 AGAGTTCAAGCGT-AAGCACAAGCGTGACATCGCTGGCAATAAGC---GAGCAGTGAGGC 989418
Query 349971 GCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTC-CTTATCATCTACTACCCAAACCTCT 350029
| || | || || ||||| | || |||||| | || | | ||| | || ||| ||
Sbjct 989419 GGCTGCGTACAGCTTGTGAGAGGGCAAAGCGTACTCTGAGC-TCTTCCACGCAAGCCAGC 989477
Query 350030 ATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGG 350089
||||| ||||| || || || |||| || |||| | || || || ||||| ||
Sbjct 989478 ATTGAGATTGACTCCCTCTTCGAGGGCATTGACTTCTACACCTCCATCACTCGTGCCCGC 989537
Query 350090 TTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTATTA 350149
|| || || | | |||||||| | | || |||| || ||||| || | |
Sbjct 989538 TTCGAGGAGCTCAATGCTGATCTTTTCCGTGGTACCCTGGAGCCGGTGGAGAAGGCCCTG 989597
Query 350150 AAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTACA 350209
||||| || | ||| ||||| | || | || | || || || || ||
Sbjct 989598 CGTGATGCCAAGCTTGATAAAGGCCAGATCCAGGAGATTGTGCTCGTGGGGGGCTCCACT 989657
Query 350210 CGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAG 350268
|||||||| || | || |||| || || || || ||||||||||| | | | ||
Sbjct 989658 CGTATTCCTAAGATCCAGAAGTTGCTGCAGGACTTCTTCAATGGCAAAGAGCTCAACAAG 989717
Query 350269 ATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTATC 350328
| | || |||||||||||||||||||| |||||||| ||||| || ||| ||||| |
Sbjct 989718 AGC-ATCAATCCAGATGAAGCTGTTGCTTATGGTGCGGCTGTGCAAGCAGCTATTCTCAT 989776
Query 350329 TGGAAATAAGAGTTCTAAAATTG---ATGATCTATTACTACTAGATGTAACTCCACTTTC 350385
|| | ||| ||| ||| || | ||||| | || | ||||| || || || ||
Sbjct 989777 GGGTGACAAG---TCTGAAAATGTGCAAGATCTGCTCCTGTTGGATGTCACCCCCCTGTC 989833
Query 350386 GCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAGTACTGT 350445
|| || | || || |||||| ||| ||||||| ||| || | || | || |
Sbjct 989834 CCTGGGCATCGAGACAGCTGGTGGAGTGATGACTGCTCTCATCAAGCGTAACACCACCAT 989893
Query 350446 ACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAAC--A 350503
|| || ||| | | || || || | || | |||| || ||| ||| || | |
Sbjct 989894 TCCCACCAAACAAACGCAGACCTTCACCACCTACTCAGACAACCAG--AGCAGTGTCTTA 989951
Query 350504 ATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGAATTT 350563
| || || | ||||||||| | ||| || || || || ||| || || | |||
Sbjct 989952 GTCCAGGTGTATGAAGGTGAGAGGGCTATGACAAAGGACAACAATTTGCTGGGCAAGTTT 990011
Query 350564 ACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTTCGAT 350623
||||| | || || ||| || | ||||| |||||||| || || |||||||
Sbjct 990012 GACCTAACGGGCATCCCCCCAGCACCCCGTGGAGTCCCTCAGATCGAGGTAACTTTCGAC 990071
Query 350624 ATTGATTCAAATGGTATTTTAAATGT 350649
|| ||| | |||||||| | |||||
Sbjct 990072 ATAGATGCTAATGGTATCCTGAATGT 990097
>seq42
Length=6198043
Score = 212 bits (234), Expect = 2e-49
Identities = 376/541 (70%), Gaps = 12/541 (2%)
Strand=Plus/Plus
Query 349770 TTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGG 349829
||||||||||||| | || ||||| || |||||||| ||| | || || ||||||| |
Sbjct 3033792 TTCTTATTTTTGACCTTGGAGGTGGCACCTTTGATGTGTCAATTCTGACTATTGAAGATG 3033851
Query 349830 GAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATA 349889
| || ||||| || ||| | ||||| ||||| || ||| | ||||||||||||||||| |
Sbjct 3033852 GCATCTTTGAGGTGAAATCCACTGCAGGTGACACTCATTTGGGTGGAGAAGATTTTGACA 3033911
Query 349890 ATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAATTGATATTGGA 349948
| ||| | || || || || ||||| ||||| ||||| || | || || |
Sbjct 3033912 ACCGTATGGTCAACCACTTCATTGCTGAATTCAAGCG-CAAGCACAAGAAAGACATCAGT 3033970
Query 349949 GATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTA 350008
|| || |||||| | |||||||| | ||||||||||||||||| |||||| || |
Sbjct 3033971 GAGAACAAGAGAGCAGTTCGTCGCCTTCGTACTGCGTGTGAACGTGCAAAGCGTACCCTG 3034030
Query 350009 TCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTT 350068
||||| | || ||| || ||||||||| |||||||| ||| || | || ||||
Sbjct 3034031 TCATCAAGCACACAAGCCAGTATTGAAATCGATTCTCTCTATGAGGGTATTGACTTCTAC 3034090
Query 350069 TCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAA 350126
|||| || || | ||||| || || || || ||| || || || | | ||
Sbjct 3034091 ACATCCATCACCAGAGCTCGTTTCGAGGA--GCTGAATGCTGACCTGTTCCGTGGCACCC 3034148
Query 350127 TGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAG 350186
||||||||||||| || | | ||||| || || ||| ||||| ||||
Sbjct 3034149 TGGATCCTGTGGAGAAGGCCCTGCGGGATGCCAAGCTGGACAAGTCACAGATCCATGACA 3034208
Query 350187 TAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTT 350246
| || | ||||| || ||||| || || ||||| |||| | | || || || |
Sbjct 3034209 TCGTGCTGGTTGGGGGCTCTACTCGCATCCCAAAGATTCAGAAACTGCTTCAAGACTTCT 3034268
Query 350247 TTAATGGCAAAGAACCTT---CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTG 350303
| ||||||||||| || | ||| | || ||||| |||||||| || || |||||||
Sbjct 3034269 TCAATGGCAAAGA--GTTGAACAAGAGC-ATCAATCCTGATGAAGCCGTGGCTTATGGTG 3034325
Query 350304 C 350304
|
Sbjct 3034326 C 3034326
Score = 158 bits (174), Expect = 4e-33
Identities = 362/535 (68%), Gaps = 10/535 (2%)
Strand=Plus/Minus
Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGAT-AATTCTTTGCCATTA 183320
|||||||||| || || |||||||| || || || | | | | || |||||||||||
Sbjct 3034328 CTGCACCATAAGCCACGGCTTCATCAGGATTGAT-GCTCTTGTTCAACTCTTTGCCATTG 3034270
Query 183321 AAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACT 183380
|| || ||| ||||| || ||||| ||||| || | ||| || || || || | ||
Sbjct 3034269 AAGAAGTCTTGAAGCAGTTTCTGAATCTTTGGGATGCGAGTAGAGCCCCCAACCAGCACG 3034210
Query 183381 ACTTCATCGATATT--ACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGT 183438
| |||| ||| | |||| | | | ||| | ||| | | || || ||||| |
Sbjct 3034209 ATGTCATGGATCTGTGACTTGTCC-AGCTTG-GCATCCCGCAGGGCCTTCTCCACAGGAT 3034152
Query 183439 CCATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATG 183498
||| || | || | || | | ||| || || | ||||| || | ||||
Sbjct 3034151 CCAGGGTGCCACGGAACAGGTCAGCATTCAGCTCCTCGAAACGAGCTCTGGTGATGGATG 3034092
Query 183499 aaaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATG 183558
| ||||||||||| | ||| | ||||| |||||||| | |||||| |||||
Sbjct 3034091 TGTAGAAGTCAATACCCTCATAGAGAGAATCGATTTCAATACTGGCTTGTGTGCTTGATG 3034032
Query 183559 ATAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTAT 183618
| | || | || || |||||||| || || | || ||||| | || ||| || |
Sbjct 3034031 ACAGGGTACGCTTTGCACGTTCACACGCAGTACGAAGGCGACGAACTGCTCTCTTGTTCT 3033972
Query 183619 CTGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATG-TTGAAG-TAATCT 183676
| | || |||| || || || | || ||||||| ||| || || |||| || |
Sbjct 3033971 CACTGATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCAATGAAGTGGTTGACCATACGGT 3033912
Query 183677 TGTATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATAT 183736
||| |||||||||| ||||| ||||| || || || ||||| | ||| || ||||| ||
Sbjct 3033911 TGT--CAAAATCTTCTCCACCCAAATGAGTGTCACCTGCAGTGGATTTCACCTCAAAGAT 3033854
Query 183737 TCCGTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAAA 183791
|| ||||||||| | | |||||| |||||||| || ||||| || | ||||||
Sbjct 3033853 GCCATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAA 3033799
Score = 120 bits (132), Expect = 9e-22
Identities = 116/149 (78%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657
|| |||||| ||||||| | |||||||| |||||||||||||| ||||||| ||
Sbjct 3033507 ACTGTAACTAATGCTGTAGTCACTGTACCGGCCTATTTTAATGACTCCCAGCGCCAGGCC 3033566
Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717
|||||||||||||| | |||||| ||| | ||||| || |||| || || || || ||
Sbjct 3033567 ACAAAAGATGCTGGAACCATTGCAGGGCTCAATGTACTGCGAATTATCAACGAGCCAACA 3033626
Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAA 349746
||||| || || || ||||| || |||||
Sbjct 3033627 GCTGCTGCTATAGCCTATGGTCTGGATAA 3033655
>seq114
Length=3819349
Score = 149 bits (164), Expect = 2e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
|| || ||||| || || ||||| || || || || || ||||| | || |||||||||
Sbjct 3316232 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 3316291
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|| || || || ||||||||||| || | |||||||| |||||||| |||||||| ||
Sbjct 3316292 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGAGGAATGCCTTCTTTGTCT 3316351
Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705
|| || || || || || || ||||| | ||| |||||||| ||||| || | |||
Sbjct 3316352 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTC 3316411
Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || || || ||||| ||||||||
Sbjct 3316412 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 3316443
Score = 143 bits (158), Expect = 8e-29
Identities = 159/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
|| || ||||| || || ||||| || || || || || ||||| | || ||||| |||
Sbjct 3316004 AGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCGTCT 3316063
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|| || || || ||||| ||||| || | ||||||||||| ||||| |||||||| ||
Sbjct 3316064 TCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCTTTGTCT 3316123
Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705
|| || || || || ||||| ||||| | ||| |||||||| ||||| || | |||
Sbjct 3316124 TGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTC 3316183
Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || | ||||| ||||| ||||||||
Sbjct 3316184 TTGCCAGTCAAGGTTTTCACAAAGATCTGCAT 3316215
>seq89
Length=7284382
Score = 131 bits (144), Expect = 5e-25
Identities = 156/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
|| |||||||| ||||| ||||| || || || || || ||||| | || |||||||||
Sbjct 2822440 AGGACAAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 2822499
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|| || || || ||||||||||| || | ||||||||||| ||||| || || || |||
Sbjct 2822500 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 2822559
Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705
|| || || || || ||||| || || | ||| ||||| || || | || | ||
Sbjct 2822560 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCCACCTCCAAGGTGATGGTT 2822619
Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || || || || || ||||||||
Sbjct 2822620 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2822651
Score = 122 bits (134), Expect = 3e-22
Identities = 154/212 (73%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585
|| || || || || || ||||| || || || || || ||||| | || ||||| |||
Sbjct 2821984 AGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGCCCGTCT 2822043
Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645
|| || || || ||||||||||| || | ||||||||||| ||||| || || || |||
Sbjct 2822044 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 2822103
Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705
|| || || || || ||||| ||||| | ||| ||||| || || | || | |||
Sbjct 2822104 TGGATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGTTCCACCTCCAAGGTTATGGTC 2822163
Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || || || || || || ||||||||
Sbjct 2822164 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 2822195
>seq40
Length=8742107
Score = 104 bits (114), Expect = 7e-17
Identities = 127/173 (73%), Gaps = 3/173 (2%)
Strand=Plus/Minus
Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774
|| ||||| || ||||||||||| | || || ||| || || || || || |||
Sbjct 7887642 ACAGCTGCTGCCATTGCATATGGATTGGACAA---GAGAGAGGGTGAGAAGAACATCCTT 7887586
Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834
| ||||| | |||||||| ||||||||||| || || || ||| |||| | ||| |
Sbjct 7887585 GTATTTGACCTGGGTGGTGGAACTTTTGATGTCTCCCTCCTGACAATTGACAATGGAGTC 7887526
Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887
||||||||| || || |||||| ||||| || ||||||||||| |||||
Sbjct 7887525 TTTGAAGTTGTGGCTACCAATGGTGACACACACCTGGGTGGAGAAGACTTTGA 7887473
Score = 96.9 bits (106), Expect = 1e-14
Identities = 89/113 (79%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 349601 GTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACA 349660
|| ||| |||||||| ||||||| |||||||| || |||||||| |||||| || |||
Sbjct 7887844 GTTACTCATGCTGTTGTTACTGTGCCAGCCTACTTCAATGATGCTCAGCGTCAGGCTACA 7887785
Query 349661 AAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713
||||||||||| | ||||| ||||| || || | | || |||||||| ||
Sbjct 7887784 AAAGATGCTGGTACAATTGCTGGGTTGAACGTGATGCGCATTATTAATGAGCC 7887732
Score = 95.1 bits (104), Expect = 4e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236
|||||||| | ||| | |||||||||||||| || || || ||| | || || | |
Sbjct 7886877 ATTGATGAGATTGTTCTTGTTGGTGGTTCTACTCGCATCCCCAAAATACAGCAACTTGTT 7886818
Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296
||||| || ||||| || || |||||| | |||||||| ||||| ||||| ||
Sbjct 7886817 AAAGAGTTCTTCAATGGGAAGGAGCCTTCTCGTGGCATTAATCCGGATGAGGCTGTAGCC 7886758
Query 350297 TATGGTGCTGCTGTTCAGGC 350316
|||||||| |||||||||||
Sbjct 7886757 TATGGTGCAGCTGTTCAGGC 7886738
Score = 93.3 bits (102), Expect = 1e-13
Identities = 138/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309
|||| ||||||||||||||||| || ||||| ||||| || ||||| |||||| |
Sbjct 7886736 CAGCCTGAACAGCTGCACCATAGGCTACAGCCTCATCCGGATTAATGCCACGAGAAGGCT 7886795
Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369
| || ||||| || || ||| || | ||| || ||||| || || | ||| |||||||
Sbjct 7886796 CCTTCCCATTGAAGAACTCTTTAACAAGTTGCTGTATTTTGGGGATGCGAGTAGAACCAC 7886855
Query 183370 CGACTAATACTACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTT 183429
| || | || | ||||| |||| | || | | | || |||| | |||||| |
Sbjct 7886856 CAACAAGAACAATCTCATCAATATCAGACTTCTTTAGGTCAGAGTCTTCCAGAACTTTCT 7886915
Query 183430 CAACAGGGTCCATAGT 183445
|||||| | ||| ||
Sbjct 7886916 GAACAGGCTTCATTGT 7886931
>seq2
Length=38276455
Score = 87.8 bits (96), Expect = 5e-12
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 223722 CCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCTTTT 223781
|||||||||| || | ||||| ||||| || | |||||||||||| ||||| || |
Sbjct 2050875 CCTCATCTCTACTGATGAGCTCATTAGAAAAAGTGAGTCCAGGCATTAAGCCTCTTTTCT 2050934
Query 223782 TCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAAACG 223841
||| |||||| |||| ||||| || ||||| || || ||||| || ||||| |
Sbjct 2050935 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAATG 2050994
Query 223842 CTACTAATCGT 223852
|||||| ||||
Sbjct 2050995 CTACTACTCGT 2051005
>seq1
Length=54145758
Score = 87.8 bits (96), Expect = 5e-12
Identities = 96/125 (77%), Gaps = 2/125 (2%)
Strand=Plus/Minus
Query 223722 CCTCATCTCTTGATATTAA-TTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCTTT 223780
|||||||||| | || ||| |||||| ||||| || ||||||||||||| || |||||
Sbjct 8045433 CCTCATCTCT-GCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTAGGCCCCTCTTC 8045375
Query 223781 TTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAAAC 223840
|||| ||||||||| || ||| | || ||||| || || ||||| || ||||||
Sbjct 8045374 TTCAGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAG 8045315
Query 223841 GCTAC 223845
|| ||
Sbjct 8045314 GCAAC 8045310
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515017818595358
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