Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 >seq1 Length=54145758 Score = 104 bits (114), Expect = 2e-17 Identities = 121/162 (75%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||| || || |||||||||||||| || || || ||||| || || ||||| Sbjct 34290831 CCTGTGACATGGGCTATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGCACT 34290772 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTT---TATTTTGTGAC 111894 ||||| ||||||||||| || || ||||| || ||||| || |||| |||| | Sbjct 34290771 CCTAGTCCCATATCTCCAGACCTCTGATACAGTTGACAAGACAGTTCGCCATTTAG---A 34290715 Query 111895 ACATAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 ||||| || || ||||| |||| ||||| ||||| |||||| Sbjct 34290714 ACATAGAACTGGCAAAGAGCATGGCAAGGTGGCAAGGCCATC 34290673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391887389464318