Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq1 86.0 7e-12
seq15 84.2 2e-11
seq162 82.4 8e-11
>seq1
Length=54145758
Score = 86.0 bits (94), Expect = 7e-12
Identities = 92/122 (75%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831
||||||||||| || | |||||| ||||| | | |||||||| || || | |||||||
Sbjct 8045431 TCATCTCTGCTAATAAGTTCATTGGAAAAAGTCAATCCAGGCATTAGGCCCCTCTTCTTC 8045372
Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891
| |||||| || ||| || ||||| |||||||||||||| || ||||||||
Sbjct 8045371 AGCCAAAATATAGCAGCAAATGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 8045312
Query 74892 AC 74893
||
Sbjct 8045311 AC 8045310
>seq15
Length=17637770
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363
||||||||| || |||| ||| ||||||||||| |||||| ||| | ||||| || ||
Sbjct 6924154 AGTGAAAATATAGCGAGGGCTGGCAGCATCCTTTCCACCATGAAGCCTGGTACCAAACTG 6924213
Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423
||| | || | | || || | ||||| || || ||||| ||||||||||||||
Sbjct 6924214 ACCAATAGGTTGTAGAAGATTAACATTGTTACTTCCAACGAAGTTCTGAGCCAAGTTGAC 6924273
Query 117424 AATCGT 117429
||| ||
Sbjct 6924274 AATGGT 6924279
>seq162
Length=760493
Score = 82.4 bits (90), Expect = 8e-11
Identities = 84/110 (76%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | ||| || | ||||| ||||| ||||| || ||||||||
Sbjct 752926 GTGAAGATGTATCGAGGGCTCGCAGAGTCCTTCCCACCGTGCAGCCTTGTGCCAAACTGG 752867
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGC 152138
|| ||||| || ||||| |||||||| |||||| || ||||||||
Sbjct 752866 CCGATGGGCTGCAGCAGGTTCAGGTTGTTACTGCCCACAAAGTTCTGAGC 752817
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547132645322800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |