Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201
6-11-07] 12,186 sequences; 983,776,544 total letters
Query= NC_028379.1
Length=205896
Score E
Sequences producing significant alignments: (Bits) Value
seq31 262 5e-65
>seq31
Length=16788233
Score = 262 bits (290), Expect = 5e-65
Identities = 636/953 (67%), Gaps = 34/953 (4%)
Strand=Plus/Plus
Query 13608 GACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTATCTCGTG 13667
|| ||| ||||||||||| |||||| |||| | | | || | || ||| |
Sbjct 14018285 GAGTACCTGAACATGACGAAGGACTGCCGCAACTTCAAGGAGCGCCGGCGCTACATCGAG 14018344
Query 13668 AGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCAC 13727
|| |||||| ||| || | ||| || ||||| |||||||| || || |||||||||
Sbjct 14018345 TTCCCGCTGAGCGAGGAGGAAGCCGACTTCCCCATTGCCTACTCCATGGTCATCCACCAC 14018404
Query 13728 AAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGC 13787
|||||||||||||||||||| |||||| | | ||||||| ||||||||| ||||||||
Sbjct 14018405 AAGATCGAGATGTTCGAGCGGCTCCTGCGCTCTCTCTACGCGCCGCAGAACGTCTACTGC 14018464
Query 13788 GTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG 13847
|||||||||||| |||| | || || ||| | || ||| |||||||||
Sbjct 14018465 GTCCACGTGGACGGCAAGGCTCCCGCCGCCTTCCAGCAGGCCGTGCGTGCCATCGCCGCC 14018524
Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907
|||||||| ||||| | ||||| ||| ||| | ||||||||||| |||||||
Sbjct 14018525 TGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAGAGCGTGGTGTACGCCTCCTGGTCC 14018584
Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967
|| ||||||||||||||| ||||||| ||||||| |||||| ||| |
Sbjct 14018585 CGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGCTGCGGAGCCCCGTGCCCTGGCGC 14018644
Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027
||| | |||| | |||||| | |||||||| ||||||||||| |||||| || ||
Sbjct 14018645 TACATCCTCACCACGTGCGGCACCGACTTCCCCATCAAGACCAACGCGGAGATTGTCCGC 14018704
Query 14028 GCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCA---ACCAC 14084
|||||| || ||| || ||||| | ||||| ||| | ||| | | ||
Sbjct 14018705 GCGCTGCGGGTGCTGCAGGGGCAGAACAGCATGGAGTCGGAG---AAGCCGACGGCCTAC 14018761
Query 14085 AAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACC 14144
|||| | | ||| | | | |||| | ||| | | | | | |||
Sbjct 14018762 AAGCGGGAGCGCTGGAAGTACCAGCACCTCGTGAAGACCTCC------ATCTCCCGCACG 14018815
Query 14145 GGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTT 14204
| || | | ||| | ||| ||||||| || || || |||| | ||| ||| |
Sbjct 14018816 GCCACGGAGAAGTCGCCGTCGCCGCTGCCCTCGCCGATGTTCACGGGCAGCGCCTACATC 14018875
Query 14205 GCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGC---TC 14261
|||| ||| |||| |||||| ||| || ||| || || | ||| | || ||
Sbjct 14018876 GCGGCCACGCGGGCCTTCGTGCGGCACGTGCT---GGAGGACCCCGCGGCGCGGCGCTTC 14018932
Query 14262 ATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGA 14321
| | ||| | ||||||| |||||||||||||||||| |||||||||| || | |
Sbjct 14018933 CTCGATTGGGCCAAGGACACCTACAGCCCCGACGAGCACGTGTGGGCCACGCTGAACCGC 14018992
Query 14322 ATGTACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCGGACATGTG 14380
| ||| |||||| | | |||| || || ||||| | | || || ||||||
Sbjct 14018993 GCGCCCGGCGTGCCCGGCGCCGT-GCCGTACAGCGACAAGTTCCAGACGTCCGACATGAA 14019051
Query 14381 GGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCT 14440
|| | | | | ||||||||||| ||| || || || | | || || |
Sbjct 14019052 CGCGCTGCCCCGCCTGGTCAAGTGGCAGTACCTGGACGGAGACACGAGCCGCGGAGCGCC 14019111
Query 14441 GTACCCGCCTTGCGACGGCATCCACGTCCA-CGC--CATCTGCATCTTCGGGTCCGGCGA 14497
|||||||| ||| ||| || | |||| ||| | ||||| ||| |||| |||| ||
Sbjct 14019112 CTACCCGCCCTGCACCGG---CCGCTTCCAGCGCAGCGTCTGCGTCTACGGGGCCGGGGA 14019168
Query 14498 CGTGAAGTGGCTGAAG----AGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546
|||| ||| || | |||| || | |||| |||||||||||||||
Sbjct 14019169 CGTGGCCTGGATGCTGCGGCAGCG-CCAACTCCTG---GCCAACAAGTTCGAC 14019217
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658638857551360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |