Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tympanuchus_20cupido_20pinnatus_20[genbank_20GCA_5F001870855.1_20201 6-11-07] 12,186 sequences; 983,776,544 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq31 262 5e-65 >seq31 Length=16788233 Score = 262 bits (290), Expect = 5e-65 Identities = 636/953 (67%), Gaps = 34/953 (4%) Strand=Plus/Plus Query 13608 GACTACGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTATCTCGTG 13667 || ||| ||||||||||| |||||| |||| | | | || | || ||| | Sbjct 14018285 GAGTACCTGAACATGACGAAGGACTGCCGCAACTTCAAGGAGCGCCGGCGCTACATCGAG 14018344 Query 13668 AGGCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCAC 13727 || |||||| ||| || | ||| || ||||| |||||||| || || ||||||||| Sbjct 14018345 TTCCCGCTGAGCGAGGAGGAAGCCGACTTCCCCATTGCCTACTCCATGGTCATCCACCAC 14018404 Query 13728 AAGATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGC 13787 |||||||||||||||||||| |||||| | | ||||||| ||||||||| |||||||| Sbjct 14018405 AAGATCGAGATGTTCGAGCGGCTCCTGCGCTCTCTCTACGCGCCGCAGAACGTCTACTGC 14018464 Query 13788 GTCCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGG 13847 |||||||||||| |||| | || || ||| | || ||| ||||||||| Sbjct 14018465 GTCCACGTGGACGGCAAGGCTCCCGCCGCCTTCCAGCAGGCCGTGCGTGCCATCGCCGCC 14018524 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 |||||||| ||||| | ||||| ||| ||| | ||||||||||| ||||||| Sbjct 14018525 TGCTTCCCCAACGTCTTCGTGGCCAGCCGCCTGGAGAGCGTGGTGTACGCCTCCTGGTCC 14018584 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 || ||||||||||||||| ||||||| ||||||| |||||| ||| | Sbjct 14018585 CGGCTGCAGGCCGACCTCAACTGCATGCAGGACCTGCTGCGGAGCCCCGTGCCCTGGCGC 14018644 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 ||| | |||| | |||||| | |||||||| ||||||||||| |||||| || || Sbjct 14018645 TACATCCTCACCACGTGCGGCACCGACTTCCCCATCAAGACCAACGCGGAGATTGTCCGC 14018704 Query 14028 GCGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCA---ACCAC 14084 |||||| || ||| || ||||| | ||||| ||| | ||| | | || Sbjct 14018705 GCGCTGCGGGTGCTGCAGGGGCAGAACAGCATGGAGTCGGAG---AAGCCGACGGCCTAC 14018761 Query 14085 AAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACC 14144 |||| | | ||| | | | |||| | ||| | | | | | ||| Sbjct 14018762 AAGCGGGAGCGCTGGAAGTACCAGCACCTCGTGAAGACCTCC------ATCTCCCGCACG 14018815 Query 14145 GGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTT 14204 | || | | ||| | ||| ||||||| || || || |||| | ||| ||| | Sbjct 14018816 GCCACGGAGAAGTCGCCGTCGCCGCTGCCCTCGCCGATGTTCACGGGCAGCGCCTACATC 14018875 Query 14205 GCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGC---TC 14261 |||| ||| |||| |||||| ||| || ||| || || | ||| | || || Sbjct 14018876 GCGGCCACGCGGGCCTTCGTGCGGCACGTGCT---GGAGGACCCCGCGGCGCGGCGCTTC 14018932 Query 14262 ATGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGA 14321 | | ||| | ||||||| |||||||||||||||||| |||||||||| || | | Sbjct 14018933 CTCGATTGGGCCAAGGACACCTACAGCCCCGACGAGCACGTGTGGGCCACGCTGAACCGC 14018992 Query 14322 ATGTACGGGACGCCCGGGGGGATCCCCGTTCA-CGTCAAGTACGACACCTCGGACATGTG 14380 | ||| |||||| | | |||| || || ||||| | | || || |||||| Sbjct 14018993 GCGCCCGGCGTGCCCGGCGCCGT-GCCGTACAGCGACAAGTTCCAGACGTCCGACATGAA 14019051 Query 14381 GGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCT 14440 || | | | | ||||||||||| ||| || || || | | || || | Sbjct 14019052 CGCGCTGCCCCGCCTGGTCAAGTGGCAGTACCTGGACGGAGACACGAGCCGCGGAGCGCC 14019111 Query 14441 GTACCCGCCTTGCGACGGCATCCACGTCCA-CGC--CATCTGCATCTTCGGGTCCGGCGA 14497 |||||||| ||| ||| || | |||| ||| | ||||| ||| |||| |||| || Sbjct 14019112 CTACCCGCCCTGCACCGG---CCGCTTCCAGCGCAGCGTCTGCGTCTACGGGGCCGGGGA 14019168 Query 14498 CGTGAAGTGGCTGAAG----AGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 |||| ||| || | |||| || | |||| ||||||||||||||| Sbjct 14019169 CGTGGCCTGGATGCTGCGGCAGCG-CCAACTCCTG---GCCAACAAGTTCGAC 14019217 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658638857551360